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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca3g02778 ATGGCTACTGGTTTGGTACGCAGAGGTATTTCCAGGCTTCATAAGTCGCCGGCGGCGACGCTTTTTCTTTCCCGAGCTCATGCCTCCGAGCCTCAAGCTCAACAATCGGAACCCACCACCAGATCTTCACAAAACCTAAAGAATTTCCAAATCTACCGATGGAATCCAGACAATCCAGGCAAACCGGAACTACGAAACTACGAGATAAACCTCAAGGAGTGTGGACCGATGGTACTCGACGCGCTTATCAAGATCAAAAACGAGATCGATCCATCTCTAACGTTTCGTAGATCTTGCCGTGAAGGAATCTGCGGATCATGTGCTATGAACATCGACGGATGTAACGGACTGGCTTGTTTAACGAAGATTCCGTCGGAAGAGACGACGATGATTACGCCTTTGCCGCATATGTTTGTGATTAAGGATCTGGTGGTGGACATGACCAATTTCTATAATCAGTACAAGAGTATCGAACCATGGTTGAAGCGGAAGTCTCCGGCGCCGGCCGGTTGGGAAGGGAAAGAGATTCCACAGAGTAAGAAAGATCGAGAGAAACTCGACGGAATGTATGAATGCATATTGTGCGCCTGTTGCAGCACTTCCTGCCCTAGCTATTGGTGGAACCCTGAATCTTATCTCGGCCCTGCTGCTCTTCTCCATGCCAATAGGTGGATAATGGATAGTCGTGATGAGTACACACAGGAAAGATTAGATGCAGTAAATGATGAATTCAAGTTGTATCGATGTCATACCATTTTGAATTGTGCTCGTGCATGCCCAAAAGGTCTGAATCCCGGAAAGCAAATTCAGAACATCAAGAGTCTTCAGACGTAA 834 46.88 MATGLVRRGISRLHKSPAATLFLSRAHASEPQAQQSEPTTRSSQNLKNFQIYRWNPDNPGKPELRNYEINLKECGPMVLDALIKIKNEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIPSEETTMITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSPAPAGWEGKEIPQSKKDREKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEYTQERLDAVNDEFKLYRCHTILNCARACPKGLNPGKQIQNIKSLQT 277
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca3g02778 277 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 192 203 IPR017900 -
Laca3g02778 277 Pfam 2Fe-2S iron-sulfur cluster binding domain 48 151 IPR025192 GO:0009055(InterPro)|GO:0051536(InterPro)
Laca3g02778 277 SUPERFAMILY 2Fe-2S ferredoxin-like 47 146 IPR036010 GO:0051536(InterPro)
Laca3g02778 277 FunFam Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial 37 146 - -
Laca3g02778 277 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 49 137 IPR001041 GO:0051536(InterPro)
Laca3g02778 277 PANTHER SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN 18 276 IPR050573 GO:0005739(PANTHER)|GO:0009060(PANTHER)|GO:0022904(PANTHER)
Laca3g02778 277 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 182 212 IPR017896 -
Laca3g02778 277 Gene3D - 147 277 IPR009051 GO:0051536(InterPro)
Laca3g02778 277 Pfam 4Fe-4S dicluster domain 191 264 - -
Laca3g02778 277 SUPERFAMILY alpha-helical ferredoxin 147 274 - -
Laca3g02778 277 FunFam Succinate dehydrogenase iron-sulfur subunit SdhB 147 277 - -
Laca3g02778 277 Gene3D - 37 146 IPR012675 -
Laca3g02778 277 NCBIfam succinate dehydrogenase and fumarate reductase iron-sulfur protein 51 273 IPR004489 GO:0006099(InterPro)|GO:0016491(InterPro)
Laca3g02778 277 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 99 107 IPR006058 GO:0051537(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca3g02778 K00235 succinate dehydrogenase (ubiquinone) iron-sulfur subunit [EC:1.3.5.1]
Laca3g02778 K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
115284 Laca3g02778 Laca4g04945
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr3:115622139 Laca4g00585 Laca-Chr4:23367758 dispersed
Laca Laca-Chr3:115622139 Laca4g04945 Laca-Chr4:277894697 wgd