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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca3g02828 ATGGAATCGCAAAACGACTTCGATCGGCTTCTCTTTTTTGAGCATGCTCGCCGGAGTGCCGAAGTTACTTATGCAAAAAATCCTCTCGATACAGAGAATCTAACCAGATGGGGAGGTTCGTTGCTTGAATTGTCGACCTTCCAGAGTGTTCAGGAATCAAAAGTCATGATTAAAGATGCTATATCTAAATTGGATGAAGCATTATCGATTGATCCAAGGAAACATGATGCGTTGTGGTATATGGGCAATGCACAAACTTCTTACGCCTTTCTTACTCCTGATAAAGATGAAGCGAAAAGCTATTTTGATTCAGCTTACACTTACTTTCAGAAGGCTGTTGATGAGGATCCAGGGAATGAACTTTACCTCAAATCATTTGAAGTAGCTACAAAGGCTCCTGAATTACACTCAGAGCTTCATAGTCAAAGCCTTAGTCAACAAGCCATGGCATTAGGGTCTGGAGGAGGCCCTTCAAGTTCTTCAAGTGTTAGGGGTCCGAAGGCACAAAAAAGCAATGATTTGAAATATGATATATTTGGATGGGTTATTCTTGCGGTTAGTATTGTGGCTTGGGTTGGGTTTGCTAAAGCAAATGTACCTCCACCGCCTCCTCGATGA 618 42.07 MESQNDFDRLLFFEHARRSAEVTYAKNPLDTENLTRWGGSLLELSTFQSVQESKVMIKDAISKLDEALSIDPRKHDALWYMGNAQTSYAFLTPDKDEAKSYFDSAYTYFQKAVDEDPGNELYLKSFEVATKAPELHSELHSQSLSQQAMALGSGGGPSSSSSVRGPKAQKSNDLKYDIFGWVILAVSIVAWVGFAKANVPPPPPR 205
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca3g02828 205 MobiDBLite consensus disorder prediction 146 168 - -
Laca3g02828 205 SUPERFAMILY TPR-like 13 124 IPR011990 GO:0005515(InterPro)
Laca3g02828 205 Pfam Plant specific mitochondrial import receptor subunit TOM20 7 196 - -
Laca3g02828 205 Gene3D Tetratricopeptide repeat domain 1 150 IPR011990 GO:0005515(InterPro)
Laca3g02828 205 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 1 204 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca3g02828 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
114601 Laca2g02434 Laca3g02828
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr3:118806606 Laca4g00067 Laca-Chr4:2970773 dispersed
Laca Laca-Chr2:99186589 Laca3g02828 Laca-Chr3:118806606 transposed
Laca Laca-Chr2:127798806 Laca3g02828 Laca-Chr3:118806606 wgd
Laca Laca-Chr3:26313251 Laca3g02828 Laca-Chr3:118806606 wgd