AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Laca3g02838 | ATGGGTCGGGTCAAGGATTTGATCCTCACTTTCTTCAACAACAGATGGCTTGTTTTTGTGGCGGCAATGTGGATTCAATCGTGCGCCGGAATCGGCTACTTGTTCGGAAGTATTTCTCCGGTGATCAAGAGTTCATTGAACTATAATCAGAAGCAGGTTGCGAGATTGGGTGTAGCTAAGGATCTCGGTGATAGTGTTGGGTTTTTGGCCGGAAGTATGTCGGAGATATTGCCGTTGTGGGCTCTGTTACTTGTTGGTGCTGTTCAGAACTTTGTTGGGTATGGTTGGGTGTGGCTCATCATCACCGGTAGAGCTCCGGTGTTGCCATTGTGGGTTATGTGCCTTCTGATATTCATCGGAACAAATGGCGAAACATACTTCAACACAGTCGCACTAGTTTCATGTGTTCAAAACTTCCCCAAAAGCCGTGGCCCAGTCGTCGGAATCCTAAAGGGATTCGCAGGTCTCGGCGGCGCAATCTTAACCCAGATATACGCGTTAGTCAAATCACCAGATAGCGCTTCCCTTATCTTCATGGTCGCCGTCGGACCTTCCATGGTGGTCATCTCCCTCATGTTCATCGTCAGACCAGTCGGAGGTCACAGACAACTCCGAACATCAGACGCATCAAGCTTCTCGTTCATCTACTGCATCTGTCTCATTCTCGCCGCTTACTTAATGGGTGTTATGCTCGTCGAAGATTTAGTCGATCTAAGCCAAACAATAGTCCAAATTTTCACCGCGATTTTGTTCGTCCTGTTAGTAGTTCCGATCGGAATTCCATTATGGTTAACCTTTTCTTCAGATCGGAGAAACCCAAACCCAAACCCAAACGAAGAATCTCTTCTACCCGAATCAGAATACAAAGAACCCGAAAGATCCGAACACGATCCAAACGAAATCATATTCAGTGAACTAGAAGACGAGAAGCCGAGAGAAGTCGATTTACTTCCGGCATCAGAACGACAAAAGAGGATCCTGCAACTACAGTCGAAGCTAGCTCAGGCAGCGGCAGAAGGAGCGGTGAGGATTAAGAGGCGAAGAGGACCACATCGAGGGGAGGATTTTGATCTGACACAAGCTTTGATCAAGGCAGATTTCTGGTTGATTTTTTGGTCGCTTCTGTTGGGATCTGGTTCAGGGTTAACAGTGATTGATAATTTAGGGCAGATGAGTGAATCTTTAGGGTATGATAACACGCATATTTTTGTCTCCATGATCAGTATTTGGAACTTCTTGGGTCGTGTTGGAGGTGGCTATTTCTCAGAGATTATTGTCAGGGATTACGCATACCCCCGACCCGTAGCCATGGCAGTTGCCCAAGCCATAATGGCAATCGGGCATTTATTCTTCGCCATGGGTTGGCCTGGGGCAATGTACATCGGTACCCTTCTAATCGGATTAGGGTACGGGGCCCATTGGGCCATCGTACCCGCTACAGCCTCCGAATTATTTGGACTCAAAAAATTCGGAGCGCTGTACAATTTCCTAACACTAGCGAACCCTGCGGGTTCGCTAGTGTTCTCTGGTGTCATTGCCAGCTATATTTACGACTCTGAAGCCGAGAAACAAGCAGCACAGCGCCACCAACAAATTACCAATTCCACTTCTTCTTTTCTTACCAAACTTTTTGACACGGATGACGCACTCAAGTGTGAAGGCTCGGTGTGCTTCTTTTTGACATTCATGATAATGTCGGGACTTTGTATCATTGCGCTTATCTTAAGTTTGATACTTGTGCGCCGAACTAAGGTTGTCTACCAGAACCTCTACGGGAGAACCCGCGCTTAA | 1791 | 47.07 | MGRVKDLILTFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSMSEILPLWALLLVGAVQNFVGYGWVWLIITGRAPVLPLWVMCLLIFIGTNGETYFNTVALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQIYALVKSPDSASLIFMVAVGPSMVVISLMFIVRPVGGHRQLRTSDASSFSFIYCICLILAAYLMGVMLVEDLVDLSQTIVQIFTAILFVLLVVPIGIPLWLTFSSDRRNPNPNPNEESLLPESEYKEPERSEHDPNEIIFSELEDEKPREVDLLPASERQKRILQLQSKLAQAAAEGAVRIKRRRGPHRGEDFDLTQALIKADFWLIFWSLLLGSGSGLTVIDNLGQMSESLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQAIMAIGHLFFAMGWPGAMYIGTLLIGLGYGAHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGVIASYIYDSEAEKQAAQRHQQITNSTSSFLTKLFDTDDALKCEGSVCFFLTFMIMSGLCIIALILSLILVRRTKVVYQNLYGRTRA | 596 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Laca3g02838 | 596 | Gene3D | MFS general substrate transporter like domains | 282 | 526 | IPR036259 | - | |
| Laca3g02838 | 596 | CDD | MFS-Mch1p-like | 15 | 567 | - | - | |
| Laca3g02838 | 596 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 14 | 588 | - | GO:0016020(PANTHER) | |
| Laca3g02838 | 596 | MobiDBLite | consensus disorder prediction | 274 | 304 | - | - | |
| Laca3g02838 | 596 | MobiDBLite | consensus disorder prediction | 283 | 304 | - | - | |
| Laca3g02838 | 596 | SUPERFAMILY | MFS general substrate transporter | 5 | 204 | IPR036259 | - | |
| Laca3g02838 | 596 | Pfam | Nodulin-like | 15 | 261 | IPR010658 | - | |
| Laca3g02838 | 596 | SUPERFAMILY | MFS general substrate transporter | 209 | 584 | IPR036259 | - | |
| Laca3g02838 | 596 | FunFam | Nodulin family protein | 358 | 589 | - | - | |
| Laca3g02838 | 596 | Coils | Coil | 319 | 339 | - | - | |
| Laca3g02838 | 596 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 28 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Laca3g02838 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 115293 | Laca3g02838 | Laca4g04991 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Laca | Laca-Chr1:22956618 | Laca3g02838 | Laca-Chr3:119148759 | dispersed | |
| Laca | Laca-Chr3:119148759 | Laca4g04991 | Laca-Chr4:278866156 | dispersed | |
| Laca | Laca-Chr3:119148759 | Laca4g02276 | Laca-Chr4:96436385 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lacanog00317 | . | 2 | 365 | Nodulin-like gene family | AT3G28050 | 64.865 | 3.41e-158 | 446.0 | |
| Lacanog04873 | . | 3 | 351 | Nodulin-like gene family | AT1G21890 | 58.739 | 2.27e-151 | 431.0 | |
| Lacanog05370 | . | 3 | 390 | Nodulin-like gene family | AT5G07050 | 65.586 | 0.0 | 508.0 | |
| Lacanog05887 | . | 1 | 529 | Nodulin-like gene family | AT1G74780 | 54.323 | 0.0 | 545.0 | |
| Lacanog06343 | . | 123 | 580 | Nodulin-like gene family | AT4G19180 | 26.316 | 3.08e-41 | 155.0 | |
| Lacanog06404 | . | 14 | 191 | Nodulin-like gene family | AT3G43660 | 42.254 | 1.03e-49 | 160.0 | |
| Laca1g00200 | . | 12 | 198 | Nodulin-like gene family | AT3G43660 | 69.11 | 3.48e-94 | 271.0 | |
| Laca1g00881 | ACH | 6 | 487 | Nodulin-like gene family | AT5G14120 | 59.834 | 0.0 | 576.0 | |
| Laca1g01563 | ACH | 7 | 565 | Nodulin-like gene family | AT2G39210 | 68.262 | 0.0 | 780.0 | |
| Laca1g01662 | . | 8 | 371 | Nodulin-like gene family | AT2G37460 | 64.228 | 6.71e-174 | 488.0 | |
| Laca1g01929 | ACH | 4 | 556 | Nodulin-like gene family | AT2G28120 | 66.367 | 0.0 | 758.0 | |
| Laca2g00479 | ACH | 1 | 565 | Nodulin-like gene family | AT2G39210 | 64.583 | 0.0 | 768.0 | |
| Laca2g02509 | ACH | 2 | 559 | Nodulin-like gene family | AT2G28120 | 70.088 | 0.0 | 797.0 | |
| Laca2g03087 | ACH | 7 | 338 | Nodulin-like gene family | AT2G39510 | 53.571 | 1.21e-127 | 370.0 | |
| Laca3g00414 | . | 9 | 350 | Nodulin-like gene family | AT3G30340 | 49.036 | 2.24e-122 | 356.0 | |
| Laca3g00600 | . | 10 | 342 | Nodulin-like gene family | AT5G45370 | 63.305 | 1.63e-163 | 461.0 | |
| Laca3g01510 | ACH | 22 | 364 | Nodulin-like gene family | AT5G40230 | 37.822 | 3.57e-66 | 210.0 | |
| Laca3g01512 | . | 22 | 364 | Nodulin-like gene family | AT5G40230 | 41.108 | 3.17e-80 | 247.0 | |
| Laca3g02700 | . | 2 | 360 | Nodulin-like gene family | AT3G28050 | 38.462 | 3.17e-69 | 218.0 | |
| Laca3g02701 | . | 6 | 351 | Nodulin-like gene family | AT5G40240 | 40.688 | 1.82e-86 | 264.0 | |
| Laca3g02703 | . | 83 | 364 | Nodulin-like gene family | AT5G40240 | 43.706 | 4.41e-74 | 233.0 | |
| Laca3g02704 | . | 11 | 345 | Nodulin-like gene family | AT5G40240 | 41.543 | 6.25e-86 | 263.0 | |
| Laca3g02838 | ACH | 6 | 579 | Nodulin-like gene family | AT5G14120 | 73.142 | 0.0 | 865.0 | |
| Laca3g03333 | . | 8 | 365 | Nodulin-like gene family | AT4G08300 | 38.268 | 1.20e-87 | 267.0 | |
| Laca4g00271 | . | 123 | 578 | Nodulin-like gene family | AT4G19180 | 28.452 | 1.26e-46 | 172.0 | |
| Laca4g02134 | . | 108 | 566 | Nodulin-like gene family | AT4G19180 | 34.557 | 5.34e-71 | 236.0 | |
| Laca4g02276 | ACH | 17 | 576 | Nodulin-like gene family | AT5G14120 | 60.357 | 0.0 | 677.0 | |
| Laca4g02469 | ACH | 5 | 111 | Nodulin-like gene family | AT1G80530 | 61.682 | 3.40e-43 | 148.0 | |
| Laca4g02470 | . | 5 | 110 | Nodulin-like gene family | AT1G80530 | 34.906 | 2.66e-15 | 68.2 | |
| Laca4g02471 | . | 5 | 561 | Nodulin-like gene family | AT1G80530 | 57.576 | 0.0 | 630.0 | |
| Laca4g03032 | . | 5 | 532 | Nodulin-like gene family | AT1G74780 | 55.577 | 0.0 | 555.0 | |
| Laca4g03035 | . | 2 | 433 | Nodulin-like gene family | AT1G74780 | 43.508 | 4.70e-104 | 316.0 | |
| Laca4g03036 | . | 5 | 532 | Nodulin-like gene family | AT1G74780 | 60.302 | 0.0 | 615.0 | |
| Laca4g03314 | . | 2 | 389 | Nodulin-like gene family | AT1G75500 | 72.423 | 0.0 | 568.0 | |
| Laca4g04991 | ACH | 3 | 578 | Nodulin-like gene family | AT5G14120 | 70.847 | 0.0 | 832.0 | |
| Laca5g00198 | ACH | 5 | 504 | Nodulin-like gene family | AT1G80530 | 57.54 | 0.0 | 586.0 | |
| Laca5g00652 | . | 15 | 389 | Nodulin-like gene family | AT1G75500 | 72.34 | 0.0 | 566.0 | |
| Laca5g01436 | . | 4 | 559 | Nodulin-like gene family | AT4G19450 | 49.383 | 9.08e-162 | 471.0 | |
| Laca5g02003 | . | 1 | 347 | Nodulin-like gene family | AT4G30420 | 53.107 | 1.74e-128 | 371.0 | |
| Laca5g02007 | . | 1 | 337 | Nodulin-like gene family | AT4G30420 | 53.235 | 9.97e-127 | 370.0 | |
| Laca5g02008 | . | 1 | 362 | Nodulin-like gene family | AT4G30420 | 48.352 | 7.24e-123 | 357.0 | |
| Laca5g03463 | ACH | 16 | 198 | Nodulin-like gene family | AT3G43660 | 71.277 | 1.19e-93 | 270.0 | |
| Laca5g03464 | ACH | 17 | 198 | Nodulin-like gene family | AT3G43660 | 72.727 | 3.39e-94 | 271.0 | |
| Laca5g03465 | . | 3 | 195 | Nodulin-like gene family | AT3G43660 | 66.667 | 7.03e-90 | 261.0 | |
| Laca5g03466 | . | 16 | 110 | Nodulin-like gene family | AT3G43630 | 53.125 | 9.67e-24 | 90.5 | |
| Laca5g03472 | . | 41 | 98 | Nodulin-like gene family | AT3G43660 | 75.862 | 9.83e-24 | 88.2 | |
| Laca5g03473 | ACH | 48 | 195 | Nodulin-like gene family | AT3G43660 | 73.203 | 2.97e-75 | 221.0 | |
| Laca5g03474 | ACH | 17 | 198 | Nodulin-like gene family | AT3G43660 | 72.727 | 3.06e-95 | 274.0 | |
| Laca5g04466 | . | 8 | 246 | Nodulin-like gene family | AT2G30300 | 48.12 | 3.10e-68 | 221.0 | |
| Laca5g04467 | . | 376 | 494 | Nodulin-like gene family | AT2G30300 | 54.622 | 9.78e-38 | 131.0 | |
| Laca6g00476 | . | 6 | 349 | Nodulin-like gene family | AT5G45370 | 63.462 | 1.24e-160 | 453.0 | |
| Laca6g00477 | . | 6 | 349 | Nodulin-like gene family | AT5G45370 | 65.738 | 2.21e-166 | 467.0 | |
| Laca6g00495 | . | 1 | 529 | Nodulin-like gene family | AT4G19450 | 60.37 | 0.0 | 602.0 | |
| Laca6g00869 | . | 8 | 343 | Nodulin-like gene family | AT2G37460 | 62.13 | 6.12e-158 | 447.0 | |
| Laca6g00870 | . | 28 | 366 | Nodulin-like gene family | AT2G37460 | 63.158 | 5.05e-161 | 454.0 | |
| Laca6g02454 | . | 21 | 364 | Nodulin-like gene family | AT5G47470 | 53.501 | 1.89e-124 | 360.0 | |
| Laca6g02704 | . | 2 | 356 | Nodulin-like gene family | AT5G64700 | 45.225 | 1.83e-91 | 276.0 | |
| Laca7g00925 | . | 42 | 565 | Nodulin-like gene family | AT4G19450 | 46.125 | 1.72e-136 | 407.0 | |
| Laca7g02183 | ACH | 1 | 127 | Nodulin-like gene family | AT3G43660 | 51.095 | 1.36e-38 | 127.0 | |
| Laca7g02184 | ACH | 1 | 195 | Nodulin-like gene family | AT3G43660 | 62.381 | 1.01e-91 | 265.0 | |
| Laca8g00390 | ACH | 34 | 740 | Nodulin-like gene family | AT4G19180 | 51.444 | 0.0 | 654.0 | |
| Laca8g00521 | . | 4 | 367 | Nodulin-like gene family | AT2G39510 | 51.913 | 2.45e-134 | 387.0 | |
| Laca8g00522 | . | 7 | 374 | Nodulin-like gene family | AT2G39510 | 52.926 | 1.65e-143 | 410.0 | |
| Laca8g00523 | . | 7 | 327 | Nodulin-like gene family | AT2G39510 | 58.696 | 1.87e-141 | 405.0 | |
| Laca8g00524 | ACH | 7 | 214 | Nodulin-like gene family | AT2G39510 | 57.895 | 2.43e-87 | 261.0 | |
| Laca8g00525 | . | 224 | 371 | Nodulin-like gene family | AT2G37460 | 46.309 | 5.30e-45 | 149.0 | |
| Laca8g00654 | . | 1 | 566 | Nodulin-like gene family | AT2G39210 | 69.947 | 0.0 | 817.0 | |
| Laca8g02148 | . | 16 | 363 | Nodulin-like gene family | AT5G40240 | 49.716 | 1.80e-110 | 325.0 | |
| Laca8g03630 | . | 16 | 380 | Nodulin-like gene family | AT4G34950 | 55.163 | 3.10e-131 | 383.0 | |
| Laca8g04119 | ACH | 121 | 352 | Nodulin-like gene family | AT5G64700 | 38.655 | 2.66e-53 | 174.0 | |
| Laca8g04120 | . | 14 | 130 | Nodulin-like gene family | AT5G07050 | 42.735 | 7.67e-28 | 103.0 | |
| Laca8g04487 | ACH | 1 | 375 | Nodulin-like gene family | AT1G70260 | 44.562 | 7.06e-110 | 323.0 | |
| Laca9g02111 | ACH | 1 | 657 | Nodulin-like gene family | AT4G19180 | 56.433 | 0.0 | 738.0 | |
| Laca9g02609 | . | 4 | 358 | Nodulin-like gene family | AT1G09380 | 51.124 | 9.23e-128 | 369.0 | |
| Laca9g02610 | . | 15 | 358 | Nodulin-like gene family | AT1G09380 | 50.725 | 1.40e-122 | 355.0 | |
| Laca9g03692 | . | 1 | 327 | Nodulin-like gene family | AT1G25270 | 45.566 | 2.51e-101 | 303.0 |