AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca3g02878 ATGGCTTGCAAGACGGCGGTGCAGTTCTCCGACGTGCCACTTCTCGATCAGGTCAATGACAACGCCGCCTCGTTGTCCCTTTACGCCACCCGTCTCCCCACCGGATTGGATGTGAGTAATAACCGGAAAAGTTTGCCGAAATTCATGGTGGTTGGTCATAGAGGTCATGGCATGAACGTCTTGCTTTCGACTGATAAGAGAATGAATGCTTTTAAAGAGAATTCGATTCTTTCGTTCAATAACGCTGCAAATCATCCTCTTGATTTCATCGAATTCGACGTTCAGGTGACAAAAGACGACATACCAATCATTTTCCACGACAATTTCATCCTCTCTGAAGAGAATGGTATCGTAGTTGAGAAGAGGGTCACTGATTTGACAGTTGATGAGTTCTTTAGCTATGGTCCTCAAAGAATTGCAGGTGTCGTGGGTAAAACTTTGCTTAGAGAATCCCATGGACAGATAGTCGGGTGGAATGTTGAAACCGATGATCATTCTTGCACTTTACAAGAAGCTTTCGAAAAAGTGGTATACGAATACGCGCAAGAAAGACCTGTAATGTTCTCAAGCTTCCAACCCGATGTGGCCTTGATCATGAAGAAACTTCAAACTAAATACCCAGTTTACTTCTTGACAAACGGAGGAACCGAGATATTCGATGATGTTCGAATGAATTCGTTGGAAGAAGCCAAGAAGCTTGCAATCAATGGTGGATTGGATGGAATCGTTTCCGAAGTAAAGGGTATTTTCAGAAATCCTTCGGTCGTAAGAGAAATCAAAGAATCAAATCTTTCTCTCTTGACTTACGGAAAATTGAATAATGTTCCTGAAGCTGTTCATGTTCAATATCTAATGGGCGTTGAGGGTGTGATTGTCGATTTAGTTCAAGAAATCACAACTTCGGTTGCAAATATAAAGGCGACAAAAGCATACAGCGAGAGCGAAAAGAAGAAGAAGCTGCTAATCGAAGGGGAGGAAGGCGAATTACAGGTGACGGAGATCACCGACAAGATTGAATTGGCATTCTTATTAAACTTGATTTCACAAGTGATTCAACATTGA 1062 42.18 MACKTAVQFSDVPLLDQVNDNAASLSLYATRLPTGLDVSNNRKSLPKFMVVGHRGHGMNVLLSTDKRMNAFKENSILSFNNAANHPLDFIEFDVQVTKDDIPIIFHDNFILSEENGIVVEKRVTDLTVDEFFSYGPQRIAGVVGKTLLRESHGQIVGWNVETDDHSCTLQEAFEKVVYEYAQERPVMFSSFQPDVALIMKKLQTKYPVYFLTNGGTEIFDDVRMNSLEEAKKLAINGGLDGIVSEVKGIFRNPSVVREIKESNLSLLTYGKLNNVPEAVHVQYLMGVEGVIVDLVQEITTSVANIKATKAYSESEKKKKLLIEGEEGELQVTEITDKIELAFLLNLISQVIQH 353
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca3g02878 353 ProSiteProfiles GP-PDE domain profile. 48 302 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Laca3g02878 353 Pfam Glycerophosphoryl diester phosphodiesterase family 53 295 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Laca3g02878 353 Gene3D Phosphatidylinositol (PI) phosphodiesterase 37 302 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Laca3g02878 353 SUPERFAMILY PLC-like phosphodiesterases 46 296 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Laca3g02878 353 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 175 308 IPR051578 GO:0046475(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca3g02878 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
114604 Laca2g02451 Laca3g02878
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr2:128202578 Laca3g02878 Laca-Chr3:122146584 dispersed
Laca Laca-Chr3:27674489 Laca3g02878 Laca-Chr3:122146584 wgd