AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca3g02885 ATGAATTTGACAAAGAATGGATTCCGTTTCAACCTAAACCCTGATGGGGTAAACTCTTTACGTCACAAGATTGACTCCATTCCTATCGCCTATCATGGACCAAAGATAAACTGGTCAAAAGCAATTTCACTAAAAATTCGATGTTTTACTTGGAGGGCAGTTTTGGATATACTTCCAATGGCAAGAAATCTCGTGGGTAGAGCAATTAAGAGATCGGCGGTGTTGTACTGTAAAGCCGATTCGGCTAAGCTTTGTTTGTTCTGCGACAACGCCGTACACTCTGCAAATGCTTTATCTCTCAAGCACTTCCGTTCTCAGATCTGTGACAACTGCGGATCTGATGCCGTTTCCGTCGCCTGTTCAACTGATAACCTTCTCCTCTGCACCTCTTGTGATCACGATTTCCATGGCGACTCCTCCGTTTCCTCTTATCACAGTCGTGTGCCTGTTGAAGAGTTCTCCGGTTGCCCTTCCCCTCTTCAGCTGGCCTCGATTTGGGGATTTAATCTAAAACCTTCTGGTTCTAATGGCAATTCGTGTGAAAGTAAGTATTCCACTACGAATTTTCAAGATTTAGCGACGATACATGAGAAAACTCCTTGTTATGATGAGGTTCCGAGCGTTGACTGGAAATCTAGAGGTTCGGGTTGCGGAGTTCATAATAAAGTTTTGTTTAAGCAGCTGGTGGAGCTTGCGAAAGAAAGATTTGACGGGGATGGAGCTGAATTGGGGCCTCAAACCCCGAGTGGATGTGGTCGGCGGGATATTTCAGAAGGTTTCGAGTATGAGGAACAAGACGATAAGGATCTGTTGCATCAGCAAACTCCATTAACGTATCTGCTTATGCCGCCCCAGAATCCCGCGAATTCGAAAGCGAATAATGGGGGTATCACTGAATTTAGTAACATGTGGAGCTATAGCCCTAAACGCCAAACCAGTCAGATATGGGATTTTAATCTAGGAAGATCAAGATCTTCTGAGGCAGGAGTTGATAATCTTGGCTTTGCAATAAACAATTGTACTGACCTTGTTGAGGATGCTTCTTTCACAACAATGGAAGTGTTAAAAGAAATGGATGCCATAAACATATCTTTTGGCACCACATCACAAAATAAGCAGATATCAGGTTGCATATCAACTATGGAGAGTGACAACCGACCTGAAACACAAATGATGGAAACCAATAGAAGTAATCCCACAATTGACGGTCAAATGATGGAACACTTTTTAGCAACCAATCAAGGAATGGAAATACCCGCAACAACCAAAGTAGACGCGCAACAACTTGCCCAAAATAGATGTAACGCAATGTTACGTTACAAGGAGAAAAAGAAAACCCGAAGGTACGACAAGTGCATCCGGTACGAGTCACGGAAGGCGAGAGCGGATACGAGAAAACGATGGTTTGTGGTGGAAGTTAGTTTGGTAAAAGGTTGGGAAAAGGTGTGCTTTGATGCTTGA 1461 43.53 MNLTKNGFRFNLNPDGVNSLRHKIDSIPIAYHGPKINWSKAISLKIRCFTWRAVLDILPMARNLVGRAIKRSAVLYCKADSAKLCLFCDNAVHSANALSLKHFRSQICDNCGSDAVSVACSTDNLLLCTSCDHDFHGDSSVSSYHSRVPVEEFSGCPSPLQLASIWGFNLKPSGSNGNSCESKYSTTNFQDLATIHEKTPCYDEVPSVDWKSRGSGCGVHNKVLFKQLVELAKERFDGDGAELGPQTPSGCGRRDISEGFEYEEQDDKDLLHQQTPLTYLLMPPQNPANSKANNGGITEFSNMWSYSPKRQTSQIWDFNLGRSRSSEAGVDNLGFAINNCTDLVEDASFTTMEVLKEMDAINISFGTTSQNKQISGCISTMESDNRPETQMMETNRSNPTIDGQMMEHFLATNQGMEIPATTKVDAQQLAQNRCNAMLRYKEKKKTRRYDKCIRYESRKARADTRKRWFVVEVSLVKGWEKVCFDA 486
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca3g02885 486 ProSiteProfiles CCT domain profile. 433 475 IPR010402 GO:0005515(InterPro)
Laca3g02885 486 SMART bboxneu5 108 150 IPR000315 GO:0008270(InterPro)
Laca3g02885 486 SMART bboxneu5 61 107 IPR000315 GO:0008270(InterPro)
Laca3g02885 486 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 72 469 - -
Laca3g02885 486 ProSiteProfiles Zinc finger B-box type profile. 103 150 IPR000315 GO:0008270(InterPro)
Laca3g02885 486 Pfam CCT motif 433 467 IPR010402 GO:0005515(InterPro)
Laca3g02885 486 CDD Bbox1-BBX-like 70 107 IPR049808 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca3g02885 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr3:122511504 Laca8g04166 Laca-Chr8:197705710 dispersed
Laca Laca-Chr3:122511504 Laca5g03062 Laca-Chr5:190409855 transposed
Laca Laca-Chr3:122511504 Laca9g03323 Laca-Chr9:136295091 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lacanog00571 . 11 328 C2C2-CO-like Transcription Factor family AT2G47890 45.902 2.92e-95 286.0
Lacanog03108 . 4 92 C2C2-CO-like Transcription Factor family AT5G54470 59.551 1.06e-30 113.0
Lacanog05220 . 210 278 C2C2-CO-like Transcription Factor family AT2G24790 42.029 6.03e-11 61.2
Laca1g01202 . 3 221 C2C2-CO-like Transcription Factor family AT3G21150 30.833 2.30e-19 81.3
Laca1g02290 ACH 307 388 C2C2-CO-like Transcription Factor family AT5G24930 42.683 1.24e-12 67.0
Laca2g00959 ACH 315 386 C2C2-CO-like Transcription Factor family AT5G24930 42.466 4.84e-11 62.0
Laca2g02229 ACH 9 347 C2C2-CO-like Transcription Factor family AT3G02380 52.255 5.88e-122 354.0
Laca2g03662 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 54.167 4.78e-10 58.5
Laca3g01318 ACH 3 114 C2C2-CO-like Transcription Factor family AT4G27310 52.174 4.62e-33 117.0
Laca3g02767 . 289 400 C2C2-CO-like Transcription Factor family AT1G68520 40.0 1.64e-18 83.6
Laca3g02885 . 17 391 C2C2-CO-like Transcription Factor family AT2G33500 40.876 7.48e-74 237.0
Laca4g01892 ACH 3 106 C2C2-CO-like Transcription Factor family AT4G27310 50.476 4.28e-31 112.0
Laca4g04733 ACH 58 347 C2C2-CO-like Transcription Factor family AT3G02380 38.339 2.05e-55 181.0
Laca5g00605 . 272 320 C2C2-CO-like Transcription Factor family AT3G02380 56.0 4.06e-13 65.9
Laca5g00644 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 40.87 6.71e-74 229.0
Laca5g01239 . 45 406 C2C2-CO-like Transcription Factor family AT5G24930 50.0 9.53e-96 289.0
Laca5g01912 ACH 288 399 C2C2-CO-like Transcription Factor family AT1G68520 46.903 1.24e-21 94.0
Laca5g01989 ACH 1 355 C2C2-CO-like Transcription Factor family AT5G57660 44.389 6.35e-96 289.0
Laca5g02932 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.273 2.49e-88 263.0
Laca5g02959 . 1 224 C2C2-CO-like Transcription Factor family AT1G75540 49.78 8.43e-65 204.0
Laca5g03062 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 52.273 4.04e-130 376.0
Laca6g02140 . 176 278 C2C2-CO-like Transcription Factor family AT3G07650 41.525 3.29e-15 71.6
Laca6g02317 ACH 225 276 C2C2-CO-like Transcription Factor family AT2G24790 51.923 1.85e-11 62.0
Laca7g02729 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 55.422 1.87e-140 403.0
Laca7g02816 ACH 1 277 C2C2-CO-like Transcription Factor family AT1G78600 45.614 5.08e-68 211.0
Laca8g00164 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 56.25 9.87e-11 59.7
Laca8g01266 . 10 273 C2C2-CO-like Transcription Factor family AT1G68190 39.13 5.30e-63 204.0
Laca8g02571 ACH 2 355 C2C2-CO-like Transcription Factor family AT5G57660 42.278 2.79e-83 256.0
Laca8g03754 . 1 163 C2C2-CO-like Transcription Factor family AT4G38960 65.318 1.46e-77 227.0
Laca8g03806 ACH 4 168 C2C2-CO-like Transcription Factor family AT5G54470 42.105 7.35e-27 101.0
Laca8g04166 . 1 399 C2C2-CO-like Transcription Factor family AT2G33500 39.524 8.10e-82 253.0
Laca9g00690 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 40.698 3.70e-11 60.1
Laca9g01991 ACH 285 331 C2C2-CO-like Transcription Factor family AT5G57660 55.319 2.73e-10 57.4
Laca9g02619 . 1 87 C2C2-CO-like Transcription Factor family AT5G54470 59.77 3.44e-30 113.0
Laca9g03246 ACH 1 103 C2C2-CO-like Transcription Factor family AT1G78600 85.437 7.21e-62 195.0
Laca9g03323 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.47 2.40e-126 366.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Laca CCT 1.8e-08 CL0281 TF C2C2-CO-like