AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca3g02888 ATGGAGGAAACGACGACGCCGGATGGTTCCATCGTAGATGAATCGGAGATAGAGTATGTGAGCTATGCCGGCGAGCATCACTTGCCCCTTATCATGCGCCTCGTTGATGAAGAACTCAGCGAACCCTATTCCATCTTCACCTATCGTTACTTCGTTTATCTCTGGCCCAATCTCTCCTTCCTCGCGTTCCATAAGGGGAAATGCATCGGAACAGTGGTTTCTAAAATGGGAGAACACCGTAATACTTTCAGAGGCTACATTGCTATGCTCGTTGTCCTCAAACCTTATCGTCACAGAGGAATTGCTACAGAACTTGTTACAAGATCCATAAAAGTGATGATGGAATCAGGTTGTGAAGAGGTAACATTGGAAGCTGAAGTGACAAATAAGGGTGCGCTTGCATTATATGGGCGTCTGGGGTTTATAAGAGCAAAAAGGCTATTTAGATACTATTTGAATGGTGTTGATGCATTTAGATTGAAGTTGCTATTTCCACATCAAGAATTACCATCTTCCCACCCCTACCCCCACTCCAACACTGTAATGTCATCGGTTCTTGAGAGTTATGCAGCTCATGAACTTGGTCCATGA 591 44.5 MEETTTPDGSIVDESEIEYVSYAGEHHLPLIMRLVDEELSEPYSIFTYRYFVYLWPNLSFLAFHKGKCIGTVVSKMGEHRNTFRGYIAMLVVLKPYRHRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNGVDAFRLKLLFPHQELPSSHPYPHSNTVMSSVLESYAAHELGP 196
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca3g02888 196 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 22 165 IPR016181 -
Laca3g02888 196 CDD NAT-SF 59 124 - -
Laca3g02888 196 Pfam Acetyltransferase (GNAT) family 31 141 IPR000182 GO:0016747(InterPro)
Laca3g02888 196 Gene3D - 20 179 - -
Laca3g02888 196 PANTHER N-ALPHA-ACETYLTRANSFERASE 30 11 168 IPR044542 GO:0004596(PANTHER)|GO:0004596(InterPro)|GO:0017196(PANTHER)|GO:0017196(InterPro)|GO:0031417(PANTHER)
Laca3g02888 196 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 17 165 IPR000182 GO:0016747(InterPro)
Laca3g02888 196 FunFam N-alpha-acetyltransferase MAK3 isoform A 24 175 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca3g02888 K00670 N-alpha-acetyltransferase 30 [EC:2.3.1.256]
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Laca Acetyltransf_1 4.4e-16 CL0257 TR GNAT