AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca3g02896 ATGGCTACCGCTAGTACTGGTAGCAAACAGGCTAAGGAAGTGATCCGATTGGAGCGTGAAGCTGTAATTCCAGTTTTGAAGCCTAAGCTCATCATGACTTTGGCTAACCTCATTGAACAGAGTTCTGATCGATCAGAGTTCTTGAAGCTCTGCAAGAGAGTTGAGTACACGATTCGAGCATGGTATCTTCTTCAGTTTGAAGATCTTATGCAACTATATGCACTCTTTGATCCAGACTATGGAGATCAGAAACTTCAGCAACAACATTTGTCCTCGGATGAGGTTGATGTTCTTGAACAAAACTTCCTCAACTACATGTTTAAGGTAATGGAAAAGAGTAATTTTAAGATTGCTACCGAGGAGGAGATTGCGGTTGCACAATCAGGGCAATATCGTCTAAATCTTCCCATCTCAGTGGATGAATCAAAGCTTGATAAGAAACTGTTAAAGAGGTACTTTTCAGAGCATCCTAGAGAAAACCTTCCCGACTTTGCAGATAAGTATATAATTTTTCGACGTGGAATTGGAATTGATCGGACAACTGATTACTTTATAATGGAGAAAGTGGACATTTTCATTTCCCGTATATGGGGATGGATCATGAGAGTAACTAGGCTAGAGAAGTTATTTCCTAAAAAAACAAGGGCGATAATTAGGAAAGTTATGAAGAAAGAGGATGAAACGAAAGATATAAAGAAAGAAGGTGAAAATAGCGATGAAGAATTTCAGGATGATTTGTATGTTGAGCGGATTCGTATTGAAAATTTGGATTTCAGTTTACAGAATTTGGCAAGTAAGATTACAATCCAAGAACCTACATTTGACAGGATAATTGTGGTTTACAGGCTAGCAGGGAGTAAGACAAAAAAGGAAAGAGGGATATATGTGAAGCATTTAAAACAGATCCCAATGGCAGATATGGAAATAGTATTGCCTGAGAAGAAAAATCCAAGTCTAACACCTATGGACTGGGTCAAATTCCTTACCACTGCTGTACTTGGTCTGGGAGCTGCAACTGGTTCAATCCAGACACCTGAAGCTGACTTTTGGGTCATTGTTGCTGTTGTGTCTTCAGTGATTGGATACTGTGCCAAAATATACTTTACGTTTCAGGCAAATATGGAAATGTATCAGAACTTAATTACACAATTCATGTATGACAAACAACTGGATAGTGGAAAAGGAACTCTTCTTCATTTGTGCGATGATGTGATTCAACAAGAAGTAAAAGAGGTGATCATTTCTTTTTTTATATTAATGGAACAGGGCAAAGCAACTTTAAAGGAACTTGACAAAAAATGTGAGGAACTAATAAATGATGAGTTTGGTGAGAGATGCAACTTTGATGTGGATGATGCTGTCCAAAAATTAGAAAAGCTGGGTATTATTGCTAAGGTGAGTTTGCACTTCTGCTTTTCTCTTTCTTAA 1428 37.89 MATASTGSKQAKEVIRLEREAVIPVLKPKLIMTLANLIEQSSDRSEFLKLCKRVEYTIRAWYLLQFEDLMQLYALFDPDYGDQKLQQQHLSSDEVDVLEQNFLNYMFKVMEKSNFKIATEEEIAVAQSGQYRLNLPISVDESKLDKKLLKRYFSEHPRENLPDFADKYIIFRRGIGIDRTTDYFIMEKVDIFISRIWGWIMRVTRLEKLFPKKTRAIIRKVMKKEDETKDIKKEGENSDEEFQDDLYVERIRIENLDFSLQNLASKITIQEPTFDRIIVVYRLAGSKTKKERGIYVKHLKQIPMADMEIVLPEKKNPSLTPMDWVKFLTTAVLGLGAATGSIQTPEADFWVIVAVVSSVIGYCAKIYFTFQANMEMYQNLITQFMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATLKELDKKCEELINDEFGERCNFDVDDAVQKLEKLGIIAKVSLHFCFSLS 475
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca3g02896 475 PANTHER AMINOPEPTIDASE (DUF3754) 5 467 - -
Laca3g02896 475 Pfam Protein of unknown function (DUF3754) 274 395 IPR022227 -
Laca3g02896 475 Coils Coil 420 440 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca3g02896 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr3:119722399 Laca3g02896 Laca-Chr3:124493541 dispersed
Laca Laca-Chr3:124493541 Laca5g01006 Laca-Chr5:59423429 dispersed