AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02397 ATGGCCATTTTATCACCATATTCATCTTCTTTCCTAGACACACTCTTCTGCAATGAAGAACACGATCAACAATGGAGTCTTGAAGATGGCGATGGAGATGAAGATGAAGATGAAGTTACACAAACCACCCTCACAGACTCCTCTGATCTCCATTTTCCATCCCTGGGCCAGCAAGATTTGTTCTGGGAACATGAAGAACTCGTGTCTCTCCTCACAAAAGAACAAGAACAAGAAAAACAAACCACTTGTACTTTCTCTTTTGACCAAACAGATCCCTCTGTTTTTCTTGCTCGCAAAGAGGCTGTGGAATGGATCCTTAAGGTCAAAGCTCATTATGGATTCACACCTCTTACAGCCATTTTAGCTATCAATTATCTTGATAGGTTCCTCTCCAGTCTCCATTATCAGAAAGATAAGCCATGGATGATTCATCTTGTTGCAGTCAGTTGCCTCTCTTTGGCTGCTAAAGTTGAAGAGACTCAAGTCCCTCTCCTACTAGATCTTCAAGTGGAGGACGCAAAGTTCTTGTTTGAGGCCAAAAACATACAAAAGATGGAGCTTTTGGTTATGTCGACACTGAAATGGAGGATGAACCCAGTTACTCCGATCTCATTTCTTGATCACATTGTAAGAAGGCTTGGATTAAACAATCATCTCCATTGGGATTTCTTCAAGAAATGTGAAGCTCTCGTTCTTGATTTAGTCTCAGATTCAAGATTCGCATGGTATAAACCATCTGTATTAGCCACAGCTACGATGCTTCGTGTGGTAGATGAAACCGATCTTCCCAACTCCATTGACTACAAAAGTCAACTTCTGGATCTTCTCAAAACCACTAAGGAAAACGTAAACGAGTGCTACAAGCTCGTTATGGAGCTACCTTACAATCATCATAATAAGCGAAATCCAGAAGAAAACGAGACGACATATCCTGTTAGCCCAGCTGGTGTCATTGATTTCACATGTGATGAAAGTTCAAATGATTCATGGGAAATCAACGATCATCTTTTCAATCAACCTTCGTTCAAGAAAACGAGATTCGATCAACAGTTTGGGTTTAGTTCGTTTCTAAGTTTCGAACCATTTGTGAGCCCTCGCTAG 1101 40.96 MAILSPYSSSFLDTLFCNEEHDQQWSLEDGDGDEDEDEVTQTTLTDSSDLHFPSLGQQDLFWEHEELVSLLTKEQEQEKQTTCTFSFDQTDPSVFLARKEAVEWILKVKAHYGFTPLTAILAINYLDRFLSSLHYQKDKPWMIHLVAVSCLSLAAKVEETQVPLLLDLQVEDAKFLFEAKNIQKMELLVMSTLKWRMNPVTPISFLDHIVRRLGLNNHLHWDFFKKCEALVLDLVSDSRFAWYKPSVLATATMLRVVDETDLPNSIDYKSQLLDLLKTTKENVNECYKLVMELPYNHHNKRNPEENETTYPVSPAGVIDFTCDESSNDSWEINDHLFNQPSFKKTRFDQQFGFSSFLSFEPFVSPR 366
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02397 366 Pfam Cyclin, N-terminal domain 72 198 IPR006671 -
Laca7g02397 366 SMART Cyclin-C-2 200 313 IPR004367 -
Laca7g02397 366 Gene3D - 70 288 - -
Laca7g02397 366 FunFam D6-type cyclin 78 198 - -
Laca7g02397 366 SMART cyclin-7 103 191 IPR013763 -
Laca7g02397 366 Gene3D - 80 198 - -
Laca7g02397 366 ProSitePatterns Cyclins signature. 98 129 IPR048258 -
Laca7g02397 366 SUPERFAMILY Cyclin-like 63 198 IPR036915 -
Laca7g02397 366 PANTHER CYCLINS 63 293 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Laca7g02397 366 FunFam CYCLIN D32 199 288 - -
Laca7g02397 366 CDD CYCLIN-AtCycD-like-rpt2 200 290 - -
Laca7g02397 366 CDD CYCLIN-AtCycD-like-rpt1 97 195 - -
Laca7g02397 366 Pfam Cyclin, C-terminal domain 200 299 IPR004367 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02397 K14505 cyclin D3, plant
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr3:84811268 Laca7g02397 Laca-Chr7:114244237 dispersed
Laca Laca-Chr4:253714260 Laca7g02397 Laca-Chr7:114244237 dispersed
Laca Laca-Chr6:131485315 Laca7g02397 Laca-Chr7:114244237 dispersed
Laca Laca-Chr6:137191151 Laca7g02397 Laca-Chr7:114244237 dispersed
Laca Laca-Chr7:114244237 Laca9g02503 Laca-Chr9:86154978 dispersed
Laca Laca-Chr7:114244237 Laca4g03573 Laca-Chr4:190112792 transposed
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lacanog01060 . 1 293 Core Cell Cycle gene family AT3G48750 74.061 1.63e-165 459.0
Lacanog01473 . 1 80 Core Cell Cycle gene family AT2G27970 91.463 1.66e-52 163.0
Lacanog01563 . 19 304 Core Cell Cycle gene family AT1G76540 25.449 1.33e-26 107.0
Lacanog02721 . 9 281 Core Cell Cycle gene family AT4G34160 50.704 8.73e-96 288.0
Lacanog03061 . 182 278 Core Cell Cycle gene family AT5G67260 42.857 3.16e-24 97.4
Lacanog03923 . 209 361 Core Cell Cycle gene family AT5G11300 35.256 7.06e-23 99.8
Lacanog04013 . 1 430 Core Cell Cycle gene family AT1G76310 57.269 5.92e-172 487.0
Lacanog05792 . 199 430 Core Cell Cycle gene family AT1G76310 67.811 3.67e-118 342.0
Lacanog05793 . 1 172 Core Cell Cycle gene family AT1G76310 45.918 3.10e-31 116.0
Lacanog06596 . 21 469 Core Cell Cycle gene family AT5G10270 42.766 7.06e-112 343.0
Lacanog06701 . 1 430 Core Cell Cycle gene family AT1G76310 53.097 4.30e-147 423.0
Lacanog06705 . 1 430 Core Cell Cycle gene family AT1G76310 57.965 5.83e-173 489.0
Laca1g00415 . 18 383 Core Cell Cycle gene family AT5G10270 46.612 1.68e-105 328.0
Laca1g00691 ACH 1 353 Core Cell Cycle gene family AT5G43080 57.796 1.59e-147 419.0
Laca1g00752 . 18 364 Core Cell Cycle gene family AT5G10270 47.727 5.03e-109 334.0
Laca1g01659 . 14 304 Core Cell Cycle gene family AT1G76540 26.316 7.35e-29 113.0
Laca1g03543 . 58 296 Core Cell Cycle gene family AT4G03270 34.711 2.59e-32 118.0
Laca2g01086 ACH 1 220 Core Cell Cycle gene family AT5G48820 40.833 1.35e-37 129.0
Laca2g01887 . 2 423 Core Cell Cycle gene family AT2G17620 55.708 3.04e-147 423.0
Laca2g02116 . 7 322 Core Cell Cycle gene family AT4G37630 37.994 1.19e-54 179.0
Laca2g02120 ACH 12 304 Core Cell Cycle gene family AT1G76540 31.068 6.21e-41 146.0
Laca2g02135 ACH 12 304 Core Cell Cycle gene family AT1G76540 29.773 2.10e-43 152.0
Laca2g02170 . 150 195 Core Cell Cycle gene family AT1G49620 60.87 7.78e-15 68.2
Laca2g02286 . 18 357 Core Cell Cycle gene family AT5G10270 46.176 4.07e-104 322.0
Laca2g02306 . 189 323 Core Cell Cycle gene family AT5G10270 49.63 1.09e-33 124.0
Laca3g00708 . 18 363 Core Cell Cycle gene family AT5G10270 52.161 3.63e-121 365.0
Laca3g00754 . 1 427 Core Cell Cycle gene family AT5G25380 49.336 3.93e-133 388.0
Laca3g00821 . 86 157 Core Cell Cycle gene family AT2G38620 54.321 2.92e-18 79.0
Laca3g00989 . 20 968 Core Cell Cycle gene family AT3G12280 68.64 0.0 1326.0
Laca3g01167 . 18 377 Core Cell Cycle gene family AT5G10270 49.725 1.44e-116 352.0
Laca3g02053 . 22 429 Core Cell Cycle gene family AT1G20610 56.01 4.08e-154 441.0
Laca3g02408 ACH 3 352 Core Cell Cycle gene family AT5G67260 45.58 9.34e-97 290.0
Laca3g02444 . 136 222 Core Cell Cycle gene family AT5G48820 43.678 8.34e-17 72.4
Laca3g02604 . 22 357 Core Cell Cycle gene family AT5G10270 46.041 3.18e-104 320.0
Laca3g03214 . 99 239 Core Cell Cycle gene family AT5G27620 28.0 6.12e-12 62.4
Laca3g03243 . 27 433 Core Cell Cycle gene family AT5G06150 50.691 2.76e-140 407.0
Laca3g03631 . 20 312 Core Cell Cycle gene family AT1G76540 35.593 2.20e-56 188.0
Laca4g00975 . 1 294 Core Cell Cycle gene family AT3G48750 86.735 0.0 538.0
Laca4g01812 . 18 368 Core Cell Cycle gene family AT5G10270 50.852 7.75e-115 354.0
Laca4g01902 . 1 299 Core Cell Cycle gene family AT4G03270 41.27 3.88e-66 207.0
Laca4g02228 . 3 289 Core Cell Cycle gene family AT3G48750 47.138 8.93e-89 277.0
Laca4g02333 . 18 357 Core Cell Cycle gene family AT5G10270 52.493 5.36e-117 355.0
Laca4g02962 . 19 459 Core Cell Cycle gene family AT1G80370 53.898 1.59e-152 439.0
Laca4g03571 . 6 391 Core Cell Cycle gene family AT1G18040 76.607 0.0 593.0
Laca4g03573 . 18 288 Core Cell Cycle gene family AT4G34160 48.561 3.80e-85 260.0
Laca4g03605 ACH 1 353 Core Cell Cycle gene family AT5G43080 58.333 2.11e-144 411.0
Laca4g03819 . 19 366 Core Cell Cycle gene family AT5G10270 44.759 1.80e-92 295.0
Laca4g04444 ACH 2 287 Core Cell Cycle gene family AT3G48750 32.667 3.93e-41 146.0
Laca4g04486 ACH 1 365 Core Cell Cycle gene family AT5G67260 42.408 3.62e-98 294.0
Laca4g04566 . 87 195 Core Cell Cycle gene family AT1G49620 39.091 1.89e-16 72.8
Laca4g04635 . 18 357 Core Cell Cycle gene family AT5G10270 47.214 2.07e-105 325.0
Laca5g00284 . 18 357 Core Cell Cycle gene family AT5G10270 51.32 2.64e-114 347.0
Laca5g00536 . 18 357 Core Cell Cycle gene family AT5G10270 47.661 2.54e-105 327.0
Laca5g00888 . 1 289 Core Cell Cycle gene family AT3G48750 42.268 1.60e-76 234.0
Laca5g01203 . 18 378 Core Cell Cycle gene family AT5G10270 49.051 1.20e-117 357.0
Laca5g01393 . 1 290 Core Cell Cycle gene family AT3G48750 38.095 8.81e-70 221.0
Laca5g01491 . 76 181 Core Cell Cycle gene family AT5G27620 27.559 2.46e-06 47.8
Laca5g01522 . 1 504 Core Cell Cycle gene family AT5G10270 73.988 0.0 723.0
Laca5g01632 . 18 419 Core Cell Cycle gene family AT5G63610 80.1 0.0 668.0
Laca5g03218 ACH 91 195 Core Cell Cycle gene family AT1G49620 42.373 2.09e-23 90.9
Laca5g03270 . 28 362 Core Cell Cycle gene family AT1G47230 48.214 5.45e-109 321.0
Laca5g03326 . 52 296 Core Cell Cycle gene family AT1G70210 42.339 6.57e-59 191.0
Laca5g03541 . 1 287 Core Cell Cycle gene family AT3G48750 36.806 1.17e-61 195.0
Laca5g03544 . 20 312 Core Cell Cycle gene family AT1G76540 34.237 2.34e-55 184.0
Laca5g03791 . 2 309 Core Cell Cycle gene family AT3G54180 83.442 0.0 537.0
Laca5g03806 . 2 309 Core Cell Cycle gene family AT3G54180 81.169 0.0 523.0
Laca5g03881 . 2 264 Core Cell Cycle gene family AT5G02110 29.818 6.53e-31 118.0
Laca5g03916 . 1 435 Core Cell Cycle gene family AT5G06150 52.339 8.21e-152 436.0
Laca5g04132 . 1 287 Core Cell Cycle gene family AT3G48750 37.847 3.84e-61 195.0
Laca5g04173 . 1 287 Core Cell Cycle gene family AT3G48750 37.716 2.61e-62 201.0
Laca5g04175 . 7 288 Core Cell Cycle gene family AT3G48750 36.042 6.33e-57 187.0
Laca5g04189 . 1 290 Core Cell Cycle gene family AT3G48750 35.274 3.92e-59 189.0
Laca5g04616 . 99 239 Core Cell Cycle gene family AT5G27620 29.054 7.18e-11 59.7
Laca5g04639 ACH 1 221 Core Cell Cycle gene family AT5G48820 44.255 5.78e-48 155.0
Laca6g00342 . 1 434 Core Cell Cycle gene family AT5G25380 51.41 4.00e-147 426.0
Laca6g00452 . 1 229 Core Cell Cycle gene family AT3G48750 40.435 1.90e-59 188.0
Laca6g01637 ACH 1 220 Core Cell Cycle gene family AT5G48820 39.565 7.26e-42 140.0
Laca6g02590 . 1 459 Core Cell Cycle gene family AT1G44110 59.167 0.0 544.0
Laca6g02747 . 21 368 Core Cell Cycle gene family AT5G10270 45.658 7.83e-100 311.0
Laca6g02821 ACH 25 338 Core Cell Cycle gene family AT2G22490 43.711 3.22e-76 237.0
Laca6g02966 . 7 312 Core Cell Cycle gene family AT4G37630 34.628 6.84e-44 150.0
Laca7g00156 . 20 307 Core Cell Cycle gene family AT1G76540 34.483 2.69e-55 184.0
Laca7g00735 . 10 290 Core Cell Cycle gene family AT3G48750 34.708 1.79e-57 187.0
Laca7g01179 . 1 478 Core Cell Cycle gene family AT4G28980 53.814 5.67e-175 497.0
Laca7g02397 . 14 286 Core Cell Cycle gene family AT4G34160 52.901 3.99e-99 297.0
Laca7g02431 . 91 195 Core Cell Cycle gene family AT1G49620 45.614 2.65e-24 93.6
Laca7g02432 ACH 91 195 Core Cell Cycle gene family AT1G49620 47.788 3.94e-25 95.5
Laca7g02917 . 18 376 Core Cell Cycle gene family AT5G10270 51.944 1.08e-119 365.0
Laca7g02970 . 1 298 Core Cell Cycle gene family AT4G03270 29.642 7.78e-26 103.0
Laca7g03084 . 10 647 Core Cell Cycle gene family AT1G16330 41.84 1.67e-150 448.0
Laca8g00724 ACH 20 306 Core Cell Cycle gene family AT1G20930 30.063 1.84e-28 115.0
Laca8g00789 . 11 315 Core Cell Cycle gene family AT1G20930 85.246 0.0 552.0
Laca8g00790 . 11 315 Core Cell Cycle gene family AT1G20930 86.23 0.0 559.0
Laca8g01515 . 73 141 Core Cell Cycle gene family AT5G10270 46.377 3.62e-10 57.8
Laca8g01620 . 7 499 Core Cell Cycle gene family AT1G02970 56.719 0.0 553.0
Laca8g01828 ACH 1 222 Core Cell Cycle gene family AT5G48820 43.902 7.71e-48 155.0
Laca8g02519 . 13 317 Core Cell Cycle gene family AT5G27620 58.958 4.09e-130 374.0
Laca8g04236 . 17 371 Core Cell Cycle gene family AT5G64960 44.78 5.99e-95 304.0
Laca8g04602 . 76 307 Core Cell Cycle gene family AT1G76540 36.017 1.67e-47 159.0
Laca9g00013 . 5 255 Core Cell Cycle gene family AT1G73690 73.152 4.23e-132 377.0
Laca9g01447 . 1 479 Core Cell Cycle gene family AT5G10270 77.328 0.0 742.0
Laca9g01556 . 92 304 Core Cell Cycle gene family AT1G76540 30.603 1.28e-26 103.0
Laca9g02195 . 218 323 Core Cell Cycle gene family AT5G10270 48.113 1.58e-23 96.3
Laca9g02503 ACH 9 271 Core Cell Cycle gene family AT5G65420 45.775 1.14e-70 220.0
Laca9g03783 . 201 290 Core Cell Cycle gene family AT3G48750 34.783 9.49e-11 56.2
Laca9g03791 . 18 370 Core Cell Cycle gene family AT5G10270 51.124 1.51e-116 358.0