AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02404 ATGACACATATACCCTTCTCAGGATCAACGACTTTACGTGGTACAACTGAGAATTGTCAAAAATCGCGTGCCCAAAACCGTAAATACCTTGGAACCCCGACCCACCACCAATCCACCCGCCCGCCTAGTAGCTCCGCCCTGTTAACCGTCTCTATTCCATATTCCATCATCATTCAAGTCCTACCAGTTAACAATCCCATCCACCGCCATCATATTCATCACAAAAACAAAGGGCTTTTCATCTTCTTCACACGTAGAGAGAGAAAACGCGTCGAGACTCTAGCTTCCGATTGTCAATTGATGGAGATCGCACCGGCGGTGCTAGCCGCACACGACGGAGTCGGAAACGCACCTGATTCTTCATCGGAATCTTCTGCTTCGACTGTTCCCGTTAATAACAATAATATCTCGAGCAACAGGTACGATGATGATGATGACGAAGAGGAAGATGTTTGCCGGATCTGTCGGAATTCAGGAGACGCCGACAATCCTCTCAGATATCCTTGTGCTTGTAGCGGGAGTATTAAGTTTGTTCACCAAGACTGCCTTCTCCAATGGCTCAATCACAGCAACGCTCGCCAGTGTGAGGTTTGCAAGCACCCCTTTTCATTCTCCCCTGTGTATGCCGAGAATACCCCAACAAGGCTTCCTTTTCAGGAATTTGTTATTGGAATGGCAATGAAAGCCTGTCATGTATTACAGTTCTTCCTACGGCTCACTTTTGTGCTTTCTGTATGGCTTTTGACCATACCATTTATAACTTTCTGGATATGGCGCTTGTCATTTGTAAGAAGTTTTGGAGAAGCCCAGAGACTATTCTTGAATCATATCTCAACTACAATCATTCTCACCGACTGTCTCCATGGATTCCTGCTCTCAGCCAGCATTGTATTCATTTTTCTTGGGGCCACATCTTTGAGGGACTATTTTCGACATTTACGAGAACTTGGGGGGCAGGATGAGGATGAAGGAGATAGAAATGGTGCTCGTGTTGCTAGGAGACAACCTCCACAAGCTAACAGAAACCTTATTGGAGATGGGAATGGTGAAGATGGTGGAGGTCAAGGTATTGCTGGTGCTGGTCAGATTATCAGAAGGAATGCAGAAAATGTTGCTGCCAGGTGGGAGATGCAAGCAGCTCGTCTTGAAGCACATGTTGAACAGATGTTTGATGGTTTGGATGATGGTGATGGTGCTGAAGATGTTCCTTTTGATGAGCTTGTTGGTATGCAGGGGCCTGTTTTCCATTTGGTGGAAAATGCATTCACTGTTCTTGCAAGCAACATGATATTCCTTGGTGTCATAATACTCATCCCCTTTCACCTAGGCCGATTGATCCTCTACATTCTTTCATCTGCCACTACTCCAATGTTATCAACCGTTGTTCCCCTCACAGAACAAGCACTTTCCCTAGCCAATATCACATTAAAAAACGCACTAACTGCAGTCACAAATCTAACATCCGATCACAATGTCCTTACCCATGTCACAGAGATGTTAAATGTCAATAATGCCACTGGACTTCAAGACTCTCCAAACAATGTCACAACTCCCATTATTCTAAAAGGGGCAGTTTCAGGAGGATCAAGATTATCTGATGTCACAACTCTTGCTGTTGGCTATCTGTTCATTTTGTCCCTAATTATTTTCTACATTGGAGTTATTGCACTTATAAGGTACACTAGAGGAGAGCCTTTAACAATGGGAAGATTCTATGGTATTGCTTCAATTGCAGAAACAATCCCTTCACTTTTTAGACAGTTCTTAGCTGCAATGAGACATTTAATGACAATGATAAAAGTCGCATTCCTTTTAGTCATTGAACTTGGAGTTTTCCCTCTAATGTGTGGATGGTGGTTGGATATTTGTACCATAAGAATGTTTGGAAAGTCAATTAGTCAAAGAGTTGACTTCTTTTCGGTTTCACCACTTGCAAGTTCATTGATTCATTGGGTTGTGGGGATTGTCTACATGTTACAAATATCCATATTTGTCAGCCTTCTTCGAGGGGTTTTGCGAAATGGGGTTCTTTATTTCTTGCGAGATCCAGCTGATCCTAACTACAACCCCTTCAGGGATTTAATCGATGATCCTGTCCACAAACATGCTCGAAGGGTATTATTGTCAATTGCTGTTTACGGGAGCTTAATTGTAATGTTGGTTTTTCTACCAGTCAAACTTGCTATGCGAATGGCTCCTTCCATCTTTCCTCTTGATATATCGGTATCTGATCCATTCACTGAGATCCCTGCTGACATGCTTCTTTTCCAAATTTGTATTCCATTTGCTGTTGAGCATTTCAAGTTGCGTGCTACAATCAAATCAATTTTGCATTATTGGTTTACTGCGGTTGGTTGGGCACTTGGGTTAACAGATTACTTGTTGCCTGAACCTGAGGGCACTGAGGGGCAAAATGGGAATGATTTAGTATATGCTGAAAATCGAGCCATAGTTGGATTGCACCCTCAAGATGTCAACCGGGTTGTGGAAGAAGATGATGGTGATGAACAATCTGATTCAGAGAGGTATACGTTTGTGTTCTGTATTGTGTTGCTTTTATTGGTGGCTTGGATGACATTGTTGATTGTGAATTCTGCTTTGATTGTGGTGCCTGTTTCCCTTGGCCGAGTCTTGTTTAATGCAGTTCCCCTTCTTCCTATTGCACACGGCATCAAATGTAACGACATATATGCCTTCATTATTGGAAGTTACGTGATCTGGACAGCATTGGCTGGAATTAGGTATTCCATTGATCAAATCAGAACAAGGAGAACCACAGTTCTACTAGGGCAAATCTGGAAATGGTGTTCCATTGTCGTGAAGAGCTCTGTACTTTTGTCAATTTGGATTTTTGTAATCCCAGTGTTAATCGGACTCCTGTTTGAACTTTTGGTAATTGTTCCCATGAGAGTACCTGTTGATGAAAGCCCTGTGTTTTTACTATATCAAGATTGGGCTCTTGGCCTTATTTTCCTCAAGATCTGGACTCGCCTTGTAATGCTGGATCACATGATGCCACTTATGGATGAGAGATGGAGAGTGAAATTCGAAAGGGTAAGAGAAGATGGTTTCTCAAGGCTTGAAGCGTTTTGGGTGCTAAAAGAGATAGTAATCCCCATCATGATGAAACTTCTCACAGCTTTATGTGTCCCTTATGTGTTAGCCCGAGGGGTATTTCCGGTATTTGGCTACCCGTTAGTGGTGAACTCGGCTGTGTATAGGTTCGCATGGGTGGGGTGCCTTGGGTTCAGTTTGGTGTGTTTCTGTGGGAAGAGGTTTCATGTGTGGTTTAGCAATTTGCATAATTCGATAAGAGACGATAGGTATTTGATTGGGAGAAGGCTTCATAATTTTGGGGAAGATCATAGTAAGAGTAGTGTTGATGATGTTGATGTTGATGATGATCATGATGATGATGATGATGATGATGATGATGATGATGACAGTGATGGTGATGATGATGAGAGTTTGAATGTGTTGGTGAGAAATGATGAGGTGGGTTTGAGGCATAGACGCCATGTGGCTGTTGAGAATGTAATGTGA 3543 42.76 MTHIPFSGSTTLRGTTENCQKSRAQNRKYLGTPTHHQSTRPPSSSALLTVSIPYSIIIQVLPVNNPIHRHHIHHKNKGLFIFFTRRERKRVETLASDCQLMEIAPAVLAAHDGVGNAPDSSSESSASTVPVNNNNISSNRYDDDDDEEEDVCRICRNSGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYAENTPTRLPFQEFVIGMAMKACHVLQFFLRLTFVLSVWLLTIPFITFWIWRLSFVRSFGEAQRLFLNHISTTIILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQDEDEGDRNGARVARRQPPQANRNLIGDGNGEDGGGQGIAGAGQIIRRNAENVAARWEMQAARLEAHVEQMFDGLDDGDGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVIILIPFHLGRLILYILSSATTPMLSTVVPLTEQALSLANITLKNALTAVTNLTSDHNVLTHVTEMLNVNNATGLQDSPNNVTTPIILKGAVSGGSRLSDVTTLAVGYLFILSLIIFYIGVIALIRYTRGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDICTIRMFGKSISQRVDFFSVSPLASSLIHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSIAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAVEHFKLRATIKSILHYWFTAVGWALGLTDYLLPEPEGTEGQNGNDLVYAENRAIVGLHPQDVNRVVEEDDGDEQSDSERYTFVFCIVLLLLVAWMTLLIVNSALIVVPVSLGRVLFNAVPLLPIAHGIKCNDIYAFIIGSYVIWTALAGIRYSIDQIRTRRTTVLLGQIWKWCSIVVKSSVLLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLMDERWRVKFERVREDGFSRLEAFWVLKEIVIPIMMKLLTALCVPYVLARGVFPVFGYPLVVNSAVYRFAWVGCLGFSLVCFCGKRFHVWFSNLHNSIRDDRYLIGRRLHNFGEDHSKSSVDDVDVDDDHDDDDDDDDDDDDSDGDDDESLNVLVRNDEVGLRHRRHVAVENVM 1180
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02404 1180 MobiDBLite consensus disorder prediction 1 21 - -
Laca7g02404 1180 MobiDBLite consensus disorder prediction 1131 1154 - -
Laca7g02404 1180 MobiDBLite consensus disorder prediction 320 356 - -
Laca7g02404 1180 CDD RING-CH-C4HC3-MARCH6 151 200 - -
Laca7g02404 1180 Coils Coil 365 385 - -
Laca7g02404 1180 FunFam Probable E3 ubiquitin ligase SUD1 137 210 - -
Laca7g02404 1180 MobiDBLite consensus disorder prediction 117 138 - -
Laca7g02404 1180 ProSiteProfiles Zinc finger RING-CH-type profile. 144 205 IPR011016 GO:0008270(InterPro)
Laca7g02404 1180 SUPERFAMILY RING-U-box 146 203 - -
Laca7g02404 1180 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 136 210 IPR013083 -
Laca7g02404 1180 ProSiteProfiles Zinc finger RING-type profile. 152 199 IPR001841 -
Laca7g02404 1180 MobiDBLite consensus disorder prediction 114 145 - -
Laca7g02404 1180 SMART ringv-2 151 199 IPR011016 GO:0008270(InterPro)
Laca7g02404 1180 PANTHER SSM4 PROTEIN 129 1125 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
Laca7g02404 1180 MobiDBLite consensus disorder prediction 1122 1158 - -
Laca7g02404 1180 Pfam RING-variant domain 152 198 IPR011016 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02404 K10661 E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:114612635 Laca8g03064 Laca-Chr8:119350818 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lacanog00797 . 98 599 HMGR gene family AT1G76490 69.488 0.0 720.0
Lacanog01845 . 109 632 HMGR gene family AT1G76490 70.802 0.0 776.0
Lacanog01846 . 51 632 HMGR gene family AT1G76490 66.105 0.0 807.0
Lacanog05402 . 67 1101 HMGR gene family AT4G34100 71.593 0.0 1506.0
Lacanog06344 . 43 141 HMGR gene family AT4G34100 31.0 1.43e-09 57.8
Laca1g00396 ACH 68 131 HMGR gene family AT4G34100 42.188 7.84e-10 58.5
Laca2g00693 . 962 1032 HMGR gene family AT4G34100 71.831 7.80e-30 117.0
Laca2g01848 ACH 51 557 HMGR gene family AT1G76490 68.665 0.0 718.0
Laca3g00496 . 41 109 HMGR gene family AT4G34100 59.211 1.73e-15 75.1
Laca3g01705 ACH 38 132 HMGR gene family AT4G34100 35.354 1.10e-10 60.1
Laca3g02027 ACH 51 399 HMGR gene family AT1G76490 62.259 7.73e-151 441.0
Laca4g04302 . 68 130 HMGR gene family AT4G34100 42.857 8.84e-12 63.2
Laca7g02404 . 35 1107 HMGR gene family AT4G34100 72.344 0.0 1550.0
Laca8g00792 . 23 632 HMGR gene family AT1G76490 70.064 0.0 870.0
Laca8g01298 ACH 68 129 HMGR gene family AT4G34100 37.097 3.86e-09 55.8
Laca8g02377 . 962 1002 HMGR gene family AT4G34100 78.049 3.86e-15 73.2
Laca8g03064 . 989 1032 HMGR gene family AT4G34100 81.818 1.28e-18 82.0
Laca8g03171 . 989 1042 HMGR gene family AT4G34100 58.929 1.65e-11 63.2
Laca8g03767 . 75 632 HMGR gene family AT1G76490 69.821 0.0 806.0
Laca9g01678 ACH 38 632 HMGR gene family AT1G76490 73.013 0.0 882.0
Laca9g02151 . 68 125 HMGR gene family AT4G34100 41.379 2.13e-10 58.5