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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02427 ATGGATTCCAACAAGCAAACTTTCGTGGAACAAGATTCAGAGATGAAGCAAAATCTAAAATCTGAAACGAAGAAGAAGAAGAGGAAGAGGGGTTCTAAAGGGACTTGGGAAGCTAAATCCAAAGATAAACAGATTGTATCAGATAAGCCCAAGAAAGCTTCTAGTAAAGGAAAAAGAACAAAAGTTTGTGACATTTATAACGATGCTGAAGATCAATACATGTGTATGGAAAGAGCAGCGATTTTATTAGAACGTTTAGATGCAAAATCACCAAAGTTTGCAAAATGTATGCTCCCTTCAAATGTTCTCTACAGTTTTTGGTTGATTTTACCAAAGAAATTTTGTGTTATGCATTTGCCTGATAATGATACAACGATTATTCTTGTTGATGAATCTGGGAAGGAGTTTAAGACGAATTATTTGAAAGTAAGACATGGGTTAAGTGCTGGATGGAGGGGGTTTTCTATTGCACAAAGGTTACTTCAGGGTGATATTTTGTTTTTTCATCTTGTTGAACCTTGTAAACTTCAGGTGAATATAGTGAGAAGATATGGTGTAGAAGCAATAGAAGCGGCTGTTTGTCTAATGGAAATGCATCCACGTGCTAAAAAAACAAGGACATCGAATTACTTTGATAAAGCGGTGGATTCTAAGAAAGAAAAACTTAAGCATAAAAAAGTTAAAGAAGAAGAAGAAGATAAAGTGGAGAATGAAATCCAAGTGCATGTACAAACAAAGAAAGGTAAAAGAACACGAAGAAGCCCAAAGAAGTTTATAAGAAAACTATCACTAGATTTTTGTTCAAATAAAGAGCATGTTGAAGAAGATGTTGAAAGGGTGTCATGTGTTGACCAATGTGATAATATCAGCGATGAGTTGACTTCAGAAGTTGTTCAAGGGTCAATAACTCAAACACAACCCGATGAAGTTGGGTCATGTGCACTGAATCTGAATTTGGGCTACCATGAGGACACCATTGACAGAAGAATATTTCATTCTTCAACAGTCGCAACATGA 1017 35.69 MDSNKQTFVEQDSEMKQNLKSETKKKKRKRGSKGTWEAKSKDKQIVSDKPKKASSKGKRTKVCDIYNDAEDQYMCMERAAILLERLDAKSPKFAKCMLPSNVLYSFWLILPKKFCVMHLPDNDTTIILVDESGKEFKTNYLKVRHGLSAGWRGFSIAQRLLQGDILFFHLVEPCKLQVNIVRRYGVEAIEAAVCLMEMHPRAKKTRTSNYFDKAVDSKKEKLKHKKVKEEEEDKVENEIQVHVQTKKGKRTRRSPKKFIRKLSLDFCSNKEHVEEDVERVSCVDQCDNISDELTSEVVQGSITQTQPDEVGSCALNLNLGYHEDTIDRRIFHSSTVAT 338
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02427 338 ProSiteProfiles B3 DNA-binding domain profile. 93 184 IPR003340 GO:0003677(InterPro)
Laca7g02427 338 MobiDBLite consensus disorder prediction 35 55 - -
Laca7g02427 338 CDD B3-DNA 91 182 IPR003340 GO:0003677(InterPro)
Laca7g02427 338 MobiDBLite consensus disorder prediction 1 55 - -
Laca7g02427 338 Gene3D - 74 184 IPR015300 -
Laca7g02427 338 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 18 183 IPR044837 -
Laca7g02427 338 Pfam B3 DNA binding domain 93 183 IPR003340 GO:0003677(InterPro)
Laca7g02427 338 SMART B3-2 93 184 IPR003340 GO:0003677(InterPro)
Laca7g02427 338 SUPERFAMILY DNA-binding pseudobarrel domain 87 183 IPR015300 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02427 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:115516204 Laca7g02429 Laca-Chr7:115587573 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lacanog01320 . 1002 1109 B3 DNA Binding Superfamily AT5G20730 59.091 4.91e-37 135.0
Lacanog02154 . 1002 1105 B3 DNA Binding Superfamily AT5G20730 58.491 2.53e-36 130.0
Lacanog03539 . 2 430 B3 DNA Binding Superfamily AT1G19220 83.683 0.0 741.0
Lacanog03632 . 112 250 B3 DNA Binding Superfamily AT3G19184 45.324 3.53e-36 133.0
Lacanog03634 . 115 236 B3 DNA Binding Superfamily AT3G19184 47.541 7.65e-38 139.0
Lacanog06828 . 2 693 B3 DNA Binding Superfamily AT2G28350 55.105 0.0 700.0
Laca1g00632 . 1 220 B3 DNA Binding Superfamily AT3G19184 54.825 7.60e-71 216.0
Laca1g00907 ACH 1 812 B3 DNA Binding Superfamily AT5G62000 58.12 0.0 865.0
Laca2g00334 . 4 895 B3 DNA Binding Superfamily AT1G19850 58.727 0.0 977.0
Laca2g01113 . 132 171 B3 DNA Binding Superfamily AT1G30330 77.5 4.10e-15 68.9
Laca2g01815 ACH 1 802 B3 DNA Binding Superfamily AT5G37020 63.744 0.0 968.0
Laca2g02458 . 72 209 B3 DNA Binding Superfamily AT3G26790 45.833 1.21e-37 135.0
Laca2g02574 ACH 62 772 B3 DNA Binding Superfamily AT5G60450 55.57 0.0 750.0
Laca2g02980 ACH 1 670 B3 DNA Binding Superfamily AT4G30080 57.349 0.0 696.0
Laca3g00324 ACH 1 614 B3 DNA Binding Superfamily AT4G23980 59.726 0.0 706.0
Laca3g02021 ACH 1 794 B3 DNA Binding Superfamily AT5G37020 62.469 0.0 917.0
Laca3g02211 . 158 284 B3 DNA Binding Superfamily AT1G05930 28.244 1.94e-07 50.4
Laca3g02443 ACH 112 230 B3 DNA Binding Superfamily AT3G19184 46.218 9.02e-30 115.0
Laca3g02510 ACH 4 107 B3 DNA Binding Superfamily AT5G66980 38.095 1.26e-19 81.6
Laca4g00255 . 10 306 B3 DNA Binding Superfamily AT5G66980 26.578 3.65e-20 88.2
Laca4g00532 . 146 289 B3 DNA Binding Superfamily AT1G05930 27.815 4.62e-08 51.6
Laca4g00534 . 146 289 B3 DNA Binding Superfamily AT1G05930 27.152 5.44e-09 54.3
Laca4g00544 . 146 289 B3 DNA Binding Superfamily AT1G05930 28.289 2.94e-10 58.2
Laca4g00545 . 146 289 B3 DNA Binding Superfamily AT1G05930 27.815 1.98e-07 49.7
Laca4g00546 . 167 289 B3 DNA Binding Superfamily AT1G05930 32.308 1.21e-11 60.8
Laca4g00547 . 146 298 B3 DNA Binding Superfamily AT1G05930 30.625 9.79e-10 55.8
Laca4g00580 . 1002 1106 B3 DNA Binding Superfamily AT5G20730 59.813 1.37e-37 134.0
Laca4g01402 ACH 1 592 B3 DNA Binding Superfamily AT2G33860 48.423 2.26e-170 496.0
Laca4g02215 . 3 158 B3 DNA Binding Superfamily AT3G06160 25.595 2.41e-09 57.4
Laca4g03598 . 4 107 B3 DNA Binding Superfamily AT5G66980 39.048 3.08e-20 83.6
Laca4g04563 ACH 145 258 B3 DNA Binding Superfamily AT3G19184 38.596 6.48e-23 93.2
Laca4g04764 . 9 120 B3 DNA Binding Superfamily AT5G66980 37.5 1.12e-17 79.0
Laca5g00158 . 264 398 B3 DNA Binding Superfamily AT2G30470 48.529 7.73e-37 136.0
Laca5g00268 ACH 1 519 B3 DNA Binding Superfamily AT5G62000 72.084 0.0 756.0
Laca5g00761 . 5 672 B3 DNA Binding Superfamily AT4G32010 46.286 0.0 609.0
Laca5g02269 . 1002 1106 B3 DNA Binding Superfamily AT5G20730 58.879 1.36e-36 131.0
Laca5g03220 ACH 5 227 B3 DNA Binding Superfamily AT3G19184 58.85 1.73e-83 248.0
Laca5g04489 ACH 5 672 B3 DNA Binding Superfamily AT4G32010 45.286 0.0 587.0
Laca5g04803 . 61 115 B3 DNA Binding Superfamily AT4G32010 32.727 4.42e-06 42.7
Laca6g00287 ACH 9 583 B3 DNA Binding Superfamily AT2G46530 58.834 0.0 652.0
Laca6g00797 . 12 662 B3 DNA Binding Superfamily AT4G30080 54.505 0.0 661.0
Laca6g01271 . 12 526 B3 DNA Binding Superfamily AT4G30080 53.89 0.0 530.0
Laca6g01303 ACH 62 768 B3 DNA Binding Superfamily AT5G60450 54.683 0.0 714.0
Laca6g02036 . 1002 1106 B3 DNA Binding Superfamily AT5G20730 59.813 1.37e-37 134.0
Laca6g02244 ACH 13 583 B3 DNA Binding Superfamily AT2G46530 61.864 0.0 687.0
Laca7g00600 . 3 510 B3 DNA Binding Superfamily AT4G32010 38.283 2.64e-89 293.0
Laca7g00666 ACH 1 563 B3 DNA Binding Superfamily AT2G33860 49.745 1.98e-174 506.0
Laca7g01025 . 1 488 B3 DNA Binding Superfamily AT1G19220 73.79 0.0 717.0
Laca7g02035 ACH 1 664 B3 DNA Binding Superfamily AT1G59750 65.63 0.0 854.0
Laca7g02427 . 102 219 B3 DNA Binding Superfamily AT3G19184 39.831 7.94e-26 102.0
Laca7g02429 ACH 112 230 B3 DNA Binding Superfamily AT3G19184 57.143 9.24e-43 149.0
Laca8g00207 . 1002 1122 B3 DNA Binding Superfamily AT5G20730 57.143 8.01e-36 140.0
Laca8g00624 ACH 1 662 B3 DNA Binding Superfamily AT4G30080 54.769 0.0 658.0
Laca8g01084 . 8 52 B3 DNA Binding Superfamily AT1G19220 59.184 1.01e-12 65.1
Laca8g02737 . 1002 1109 B3 DNA Binding Superfamily AT5G20730 59.091 4.91e-37 135.0
Laca8g03165 . 1002 1106 B3 DNA Binding Superfamily AT5G20730 58.879 2.50e-37 133.0
Laca9g00385 . 12 379 B3 DNA Binding Superfamily AT3G24650 37.531 6.17e-42 161.0
Laca9g00528 . 4 223 B3 DNA Binding Superfamily AT5G58280 50.877 1.51e-67 214.0
Laca9g00545 ACH 1 714 B3 DNA Binding Superfamily AT4G32010 46.212 0.0 654.0
Laca9g01176 . 4 766 B3 DNA Binding Superfamily AT4G32010 48.061 0.0 707.0
Laca9g01408 . 32 531 B3 DNA Binding Superfamily AT1G19850 65.882 0.0 668.0
Laca9g02352 ACH 284 545 B3 DNA Binding Superfamily AT2G28350 52.091 5.39e-72 239.0
Laca9g02365 . 1 473 B3 DNA Binding Superfamily AT1G19220 69.421 0.0 647.0
Laca9g02369 . 1002 1143 B3 DNA Binding Superfamily AT5G20730 61.486 9.27e-53 184.0
Laca9g03090 . 282 386 B3 DNA Binding Superfamily AT4G32010 46.226 6.16e-28 108.0
Laca9g03092 . 282 386 B3 DNA Binding Superfamily AT4G32010 48.113 2.12e-28 110.0
Laca9g03093 . 282 386 B3 DNA Binding Superfamily AT4G32010 49.057 3.41e-29 112.0
Laca9g03094 . 33 104 B3 DNA Binding Superfamily AT4G21550 51.389 7.11e-23 93.2
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Laca B3 1.2e-14 CL0405 TF B3