AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02512 ATGAACCTTCTTCTTCCTTCTCCCACACTCTGTTCTTCCTCTCCTCATTCCTCACACCGCCCTCCGCCGCCGCCCCACCGCCACCTCCACTTCCGAACATCACACCGGGAAAACCTCCGGTACCTAAAATCCCTTGGTATCATCCAACCAAGCTTCACAAAACCCCCATCCCCCGAAACCTTATCCCAAATCCTCTCAACCATAAACTACTTCAAATCCAAGGGATTTTCAGAACCAGATTTCCCACGAATCGCCTTTCTCTCCCCACATCTCTTCTCTCCAACCTTCAATCCCACCACCATCGATCCAGTTTTCCATTTCTTAGCCGTCGATTTAGCCGCATCGCCGGAGGAATCCCGTGGATTGATTCTTAAATGCCCTCACATCCTCGAATCGGACCCAGAATTCTGCTTGAAACCAACCCTCGAGTACCTGAAAAAATTGGGGATTACTCGGTTGCAATCTCCAACGACCTTGAACGCTCATTTACTGGATACGAGAGTGACTAAAATGGAAGAGAAGATGAGATTCTTACGAGGAGTTGGGTTTTCCGATGAGGAATCGAGAAGGGTTTGTGGGAGGTTTCCGGCGATATTTGGGTATGGTATAGAGAATAGTTTGAGACCGAAGTTTAAGTATTTGGTTATGGAGATGAAGAGAAATGGGAGAGATGAAGTGAATAAGTTTCCACAGTATTTTGGATTCAGTTTGGAGAATCGGATTAAACCCAGACATTTGCATTTGAAACGAAGGAATGTTGATGCTGCTGAGGTACCATTGAATCGGATGTTGTTGTGGAGTGATGAAAGATTTTTCAAGAAATGGAAATAA 831 45.61 MNLLLPSPTLCSSSPHSSHRPPPPPHRHLHFRTSHRENLRYLKSLGIIQPSFTKPPSPETLSQILSTINYFKSKGFSEPDFPRIAFLSPHLFSPTFNPTTIDPVFHFLAVDLAASPEESRGLILKCPHILESDPEFCLKPTLEYLKKLGITRLQSPTTLNAHLLDTRVTKMEEKMRFLRGVGFSDEESRRVCGRFPAIFGYGIENSLRPKFKYLVMEMKRNGRDEVNKFPQYFGFSLENRIKPRHLHLKRRNVDAAEVPLNRMLLWSDERFFKKWK 276
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02512 276 PANTHER CGI-12 PROTEIN-RELATED 62 274 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Laca7g02512 276 Pfam mTERF 73 271 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Laca7g02512 276 Gene3D Transcription termination factor 3, mitochondrial 27 276 IPR038538 -
Laca7g02512 276 SMART mt-12 120 151 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Laca7g02512 276 SMART mt-12 189 221 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Laca7g02512 276 SMART mt-12 154 184 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Laca7g02512 276 SMART mt-12 223 254 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Laca7g02512 276 MobiDBLite consensus disorder prediction 1 27 - -
Laca7g02512 276 MobiDBLite consensus disorder prediction 1 16 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02512 K15031 mitochondrial transcription termination factor family protein
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Laca mTERF 1.6e-33 No_clan TR mTERF