AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02546 ATGGAGGCTGTTGAAAGAAGGCCCTTTTATCTCTACAGTAAACCTCAGATAACTAGAAACGTCGAGGCTTATAAGGAAGCTTTGGAGGGACTGAATTCGATTATCGGATATGCAATTAAAGCCAATAACAACTTCTTGATCTTACAACATTTGAAGAATTTGGGTTGTGGAGCTGTTTTGGTTAGTGGAAATGAACTCAGATTAGCCATTCGTGCTGGTTTTGATCCTACCAGGTGCATTTTCAATGGAAACGGGAAGCTTTTGGATGATCTTGTTCTCGCTGCTCAAGAAGGCGTATTTGTCAACATTGACAGTGAATTCGATTTGGATAACATTGTATCTGCTGCAAGAATCGCAGGGAAGAAAGTTAATGTATTGCTCAGAATCAATCCGGATGTCGACCCTCAGGTCCATCCTTATGTTGCAACTGGAAACAAAAACTCCAAATTCGGTATAAGAAACGAGAAATTACAATGGTTTCTAGATGCTGTGAAGTCATACCCCGATGAACTTAAGCTAGTTGGCGCCCATTGCCATCTTGGATCCACCATCACCAAGGTTGACATTTTCAGAGATGCTGCATCAATCATGGTGAAGTTTATAGACGAAATTCGAGCTCAAGGATTTGATATTAATTATTTAAATATCGGAGGTGGTCTTGGGATTGATTATTATCATACTGGTACTGTTCTTCCTACACCCAGGGATCTCATTGACACAGTTAGGGAGTTGGTTTTGTCGCGAAATCTTAATCTGATAATTGAACCTGGGAGGTCGCTAATTGCAAATACTTGTTGTCTTGTGAATCGTGTCACGGGTGTGAAAACAAATGGCACGAAGAACTTTATTGTGATTGATGGAAGCATGGCTGAACTTATTCGCCCTAGTCTATATGATTCTTATCAACACATAGAATTGGTTTCACCTCCATCACCTGATTCTGCGGTTTCAACATTTGATGTTGTGGGCCCCGTTTGCGAGTCAGCTGATTTCTTGGGGAAGGACAGGGACCTTCCTTCTCCCGCCAGTGGTTCTGGGCTTGTAGTTCATGATGCGGGTGCATACTGCATGAGCATGGCATCAACTTACAACCTCAAGATGCGTCCACCTGAGTATTGGGTTGATGAAGATGGATCTGTGGCGAAAATTAGGCATGGGGAGACATTTGAAGATCATATGAGATACTTTGAGGGACTCTAG 1200 42.25 MEAVERRPFYLYSKPQITRNVEAYKEALEGLNSIIGYAIKANNNFLILQHLKNLGCGAVLVSGNELRLAIRAGFDPTRCIFNGNGKLLDDLVLAAQEGVFVNIDSEFDLDNIVSAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKSYPDELKLVGAHCHLGSTITKVDIFRDAASIMVKFIDEIRAQGFDINYLNIGGGLGIDYYHTGTVLPTPRDLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDSYQHIELVSPPSPDSAVSTFDVVGPVCESADFLGKDRDLPSPASGSGLVVHDAGAYCMSMASTYNLKMRPPEYWVDEDGSVAKIRHGETFEDHMRYFEGL 399
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02546 399 FunFam Diaminopimelate decarboxylase 250 393 - -
Laca7g02546 399 SUPERFAMILY PLP-binding barrel 7 263 IPR029066 -
Laca7g02546 399 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 206 221 IPR022657 -
Laca7g02546 399 PANTHER DIAMINOPIMELATE DECARBOXYLASE 3 395 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Laca7g02546 399 NCBIfam diaminopimelate decarboxylase 8 394 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Laca7g02546 399 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 37 55 IPR000183 GO:0003824(InterPro)
Laca7g02546 399 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 57 69 IPR000183 GO:0003824(InterPro)
Laca7g02546 399 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 252 271 IPR000183 GO:0003824(InterPro)
Laca7g02546 399 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 170 183 IPR000183 GO:0003824(InterPro)
Laca7g02546 399 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 353 366 IPR000183 GO:0003824(InterPro)
Laca7g02546 399 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 37 55 IPR022653 -
Laca7g02546 399 Gene3D Alanine racemase 14 259 IPR029066 -
Laca7g02546 399 Hamap Diaminopimelate decarboxylase [lysA]. 1 397 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Laca7g02546 399 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 16 262 IPR022644 GO:0003824(InterPro)
Laca7g02546 399 FunFam Diaminopimelate decarboxylase 14 259 - -
Laca7g02546 399 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 8 393 IPR009006 GO:0003824(InterPro)
Laca7g02546 399 SUPERFAMILY Alanine racemase C-terminal domain-like 237 394 IPR009006 GO:0003824(InterPro)
Laca7g02546 399 CDD PLPDE-III-DapDC 8 374 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Laca7g02546 399 PRINTS Diaminopimelate decarboxylase signature 55 72 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Laca7g02546 399 PRINTS Diaminopimelate decarboxylase signature 143 152 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Laca7g02546 399 PRINTS Diaminopimelate decarboxylase signature 280 298 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Laca7g02546 399 PRINTS Diaminopimelate decarboxylase signature 363 385 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Laca7g02546 399 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 263 353 IPR022643 GO:0003824(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02546 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr3:20252384 Laca7g02546 Laca-Chr7:121940672 dispersed