AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02568 ATGGCTCGTATGCATGATGAGAGCCTTAAATACGTATTATCTGATAATGCCATAGTTGCCCTTGCTGAAAAAGTTCCTTTAACCACAACAGATATCTGCACTACAATATCACAAGGTGATATCGAAACCGAATCTCTAAATTCCAATTCTACCCCTCGCTTTCCTTCCTCTGTTGTCTTGAGCCATCTTGATGACTTCACTTACCTTCTTCAAGATGGATTAAAGTTAAACAATCCTGATGATGTTTTTCAGCTGTTTCTTAAAAAGCACATTGGCCCACATGGTTCTTGTCCTCTTTCTCTTTATAACTATGGGTTGTTGTCTAAAAGTAGTATGAAAGTATCGAAAAGATTGGTTTCTAAAAATGGGTATAAGTTTTCAAAACAAGTTGCAAGGAAGGCTTCTCGAGAGCTTTTTGTTCAGAAGTTTTCGTGCAAATCTCCTGTTTATCATAACTGCAGGATATATGCTAATGATGGGCGATTGTTGTGTTATTGTGATAGAAGGAAGCTTGAATGGTATCTACAACGCGATCTAGCAAAACTCGTTGACGAAGAACCACCCGCCATAATGCTACTTTTTGAACCCAAAGGTCGCCCAGAAGACGAAGGAAACGACTTCTACATCCAAAGTAAAAAAAACATATGCGTAGGATGTGGAGAAGGGAATCACTATTTACGATACCGCATCATTCCCTCATGCTACCGAATCCACTTTCCCGAACACCTTAAAAGCCACCGCTCCCACGACATTGTTTTGGTTTGCGTCGATTGTCATGAGAAAGCACATTCCGCCGCCGAAAAGTACAAGAAGAAAGTCGCTTCGGAATTCGCGATTCCGTTGTTCGTACAAAAAGTCGTTGATTCCAATGAGGAGTCACACGATGAATCCGGAACATCTTTTATGAAACTTGCAGATGGAGGTGTGTCTCCTTTGGAGTTGAGAACTGCAGCCATGGCTCTTTTGAGACATGGACCGAGGATGCCAGCTCAGCGATGTGAGGAACTGAAAGAGGTTGTGAAGAAGTATTATGGAGGAAGAGAGATAAGTGAGGAAGATTTGGAAAATGCTTTACTTGTTGGAATGAGTCCTCATGAAAAAAGACGATTACATAAAAAGAAAGGATTGTCTCTCAATAGGAATTCATTATCTTTTAAAAAAGATGAAGGGAAAAATGATTTAGAAGATGTTGACCCAAATCCAAATGGTTCAGTGTTTGCTACGTGTAGCTCAAAGCTGTCATTGTTAGGTCATGGACCACATGGGAAACAAGTGGTTGACTTTTTGTTGAAGGAACATGGAGAAGATGGGGTGCGTGAGTTTTGTCAAAGATGGAGACAAGTGTTTGTTGAAGCTATTCATCCACGTTTTTTACCTGGTGGATGGGATGTCACACATAGTGGTAGAAGAGAGTTTGGGGACTACAGCGTGTATAATCCTGCAAACAAGGCTTCTTCTTCTTCTGCTTCTTCTTATGCTGCTGTTGTTGAAGGTTAA 1497 40.75 MARMHDESLKYVLSDNAIVALAEKVPLTTTDICTTISQGDIETESLNSNSTPRFPSSVVLSHLDDFTYLLQDGLKLNNPDDVFQLFLKKHIGPHGSCPLSLYNYGLLSKSSMKVSKRLVSKNGYKFSKQVARKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLQRDLAKLVDEEPPAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLVCVDCHEKAHSAAEKYKKKVASEFAIPLFVQKVVDSNEESHDESGTSFMKLADGGVSPLELRTAAMALLRHGPRMPAQRCEELKEVVKKYYGGREISEEDLENALLVGMSPHEKRRLHKKKGLSLNRNSLSFKKDEGKNDLEDVDPNPNGSVFATCSSKLSLLGHGPHGKQVVDFLLKEHGEDGVREFCQRWRQVFVEAIHPRFLPGGWDVTHSGRREFGDYSVYNPANKASSSSASSYAAVVEG 498
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02568 498 PANTHER POLYMYOSITIS-SCLERODERMA AUTOANTIGEN-RELATED 1 482 IPR045092 GO:0000175(InterPro)|GO:0000175(PANTHER)|GO:0000176(PANTHER)|GO:0000467(PANTHER)|GO:0000467(InterPro)|GO:0003727(PANTHER)|GO:0005730(PANTHER)|GO:0071035(PANTHER)|GO:0071036(PANTHER)|GO:0071037(PANTHER)|GO:0071038(PANTHER)|GO:0071039(PANTHER)|GO:0071040(PANTHER)|GO:0071044(PANTHER)|GO:0071051(PANTHER)
Laca7g02568 498 Gene3D HRDC domain 1 80 IPR044876 -
Laca7g02568 498 SUPERFAMILY HRDC-like 1 37 IPR010997 GO:0000166(InterPro)|GO:0044237(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02568 K12951 cobalt/nickel-transporting P-type ATPase D [EC:7.2.2.-]