Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Laca7g02571 | ATGAAGCAATCGGGTATGACGACGACATTGATGATATTCATCGTCATAGCAATGGCAGAAATCATTAATGGAGAAGACCCTTATAGATTCTTCACCTGGAATGTTACTTATGGTGATATCTACCCTCTTGGAGTTAAACAACAGGGGATTTTGATAAATGGGCAATTTCCAGGGCCACAAATCGATTCAGTGACTAATGACAATGTGATTGTTAGTATCTACAACAGCTTGGATGAACCATTCCTCATTACCTGGAACGGGATACAACAGAGAAGGAATTCATGGCAGGATGGAGTTTATGGCACGAATTGCCCGATTCCACCAGGTCAAAACTTCACCTACATTCTTCAAGTAAAGGATCAAATCGGTAGCTTCTTCTACTTCCCTTCCCTTGCTTTTCATCGAGCTGCCGGAGGCTTCGGCGGCATCACCGTCTCCAGCCGTCCAATGATCCCGGTTCCATTCCCACCACCCGCCGGAGATTTCACCATTCTCGCCGGTGACTGGTTCAAGCAAAACCACACCGATTTGAAAGCAATTCTAGACGGAGGCCATGATCTTCCATTCCCAGATGGGCTTCTCATCAATGGCCGTGGATCTAATGGATTTACATTCACTGTTGATCAGGGGAAAACTTACAGATTGAGAATTTCGAACGTGGGGCTTACAACATCGATCAATTTCAGAATCCAAGGGCATAAGATGCTGTTAGTTGAGGTCGAAGGGACTCATGCTCTTCAGAACACATACTCTTCTCTTGATATTCATCTAGGCCAGTCGTACTCCGTTTTGGTCATCGCCGATCAACCACCGCAGGACTACTACATGGTCGTTTCAACCCGATTCACCTCTCAAGTCCTCTCCGCAACCTCCATTCTTCATTACAGTAACTCTCCGGGAACTTTTCCGGCTCCCCCACCTGGTGGCCCAACCATTCAAATCGACTGGTCTCTAAATCAAGCACGATCTATCAGACAAAACTTGACGGCGAGTGGACCGAGGCCAAACCCACAAGGCTCCTACCATTACGGAATGGTTAACTTCACTCGAACGATCAGGCTCGCAAACTCTGCTCCGATCATCAATGGAAAACAGAGGTACGCCGTCAACAGCGTCTCTTTTATTCCGGCGGACACCCCTCTGAAGATCGCTGATTACTTCAAGATCTCCGGCGTCTTTTCCATTGGAACGATCTCTGATAGCCCCACCGGTGGTGGTGGTTACCTCCAGACTTCCGTCATGGCTGCTGATTTCAGAGCATTTGCTGAGATTGTGTTTGAGAATTCCGAAGATACTGTACAATCATGGCACATTGATGGCCACTTCTTCTTCGTTGTCGGGATGGATGGAGGTCCATGGTCATCTGACAGCAGAACAAGTTACAATTTAAGAGATGGGATTTCTCGCTCTACAGTTCAGGTTTATCCGCATTCGTGGACTGCATTGTATGTGCCAATGGACAATGTGGGAATGTGGAACATAAGGTCTCAAAATTGGGCTAGACAATATCTAGGTCAACAATTTTATCTTCGGGTTTATTCGCCTGTAAATTCATGGAGAGACGAATATCCGATCCCGAAGAACGCGATTACTTGTGGGCGTGCAAGCGGTCGCAAGACTCGTCCTTTGTAA | 1632 | 46.81 | MKQSGMTTTLMIFIVIAMAEIINGEDPYRFFTWNVTYGDIYPLGVKQQGILINGQFPGPQIDSVTNDNVIVSIYNSLDEPFLITWNGIQQRRNSWQDGVYGTNCPIPPGQNFTYILQVKDQIGSFFYFPSLAFHRAAGGFGGITVSSRPMIPVPFPPPAGDFTILAGDWFKQNHTDLKAILDGGHDLPFPDGLLINGRGSNGFTFTVDQGKTYRLRISNVGLTTSINFRIQGHKMLLVEVEGTHALQNTYSSLDIHLGQSYSVLVIADQPPQDYYMVVSTRFTSQVLSATSILHYSNSPGTFPAPPPGGPTIQIDWSLNQARSIRQNLTASGPRPNPQGSYHYGMVNFTRTIRLANSAPIINGKQRYAVNSVSFIPADTPLKIADYFKISGVFSIGTISDSPTGGGGYLQTSVMAADFRAFAEIVFENSEDTVQSWHIDGHFFFVVGMDGGPWSSDSRTSYNLRDGISRSTVQVYPHSWTALYVPMDNVGMWNIRSQNWARQYLGQQFYLRVYSPVNSWRDEYPIPKNAITCGRASGRKTRPL | 543 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Laca7g02571 | 543 | FunFam | Monocopper oxidase-like protein | 159 | 333 | - | - | |
| Laca7g02571 | 543 | Gene3D | - | 28 | 149 | IPR008972 | - | |
| Laca7g02571 | 543 | Pfam | Multicopper oxidase | 34 | 148 | IPR011707 | GO:0005507(InterPro) | |
| Laca7g02571 | 543 | Pfam | Multicopper oxidase | 379 | 515 | IPR011706 | GO:0005507(InterPro)|GO:0016491(InterPro) | |
| Laca7g02571 | 543 | Pfam | Multicopper oxidase | 161 | 298 | IPR001117 | - | |
| Laca7g02571 | 543 | PANTHER | MULTI-COPPER OXIDASE | 29 | 509 | IPR045087 | GO:0016491(PANTHER) | |
| Laca7g02571 | 543 | Gene3D | - | 160 | 334 | IPR008972 | - | |
| Laca7g02571 | 543 | Gene3D | - | 344 | 540 | IPR008972 | - | |
| Laca7g02571 | 543 | CDD | CuRO-1-AAO-like-1 | 30 | 145 | IPR034273 | GO:0005507(InterPro) | |
| Laca7g02571 | 543 | FunFam | Monocopper oxidase-like protein | 345 | 542 | - | - | |
| Laca7g02571 | 543 | SUPERFAMILY | Cupredoxins | 155 | 335 | IPR008972 | - | |
| Laca7g02571 | 543 | SUPERFAMILY | Cupredoxins | 345 | 534 | IPR008972 | - | |
| Laca7g02571 | 543 | SUPERFAMILY | Cupredoxins | 24 | 175 | IPR008972 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Laca7g02571 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 116379 | Laca7g02571 | Laca9g03422 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Laca | Laca-Chr4:260255837 | Laca7g02571 | Laca-Chr7:123696798 | dispersed | |
| Laca | Laca-Chr4:271541373 | Laca7g02571 | Laca-Chr7:123696798 | dispersed | |
| Laca | Laca-Chr7:123696798 | Laca9g01807 | Laca-Chr9:47402363 | dispersed | |
| Laca | Laca-Chr2:85559251 | Laca7g02571 | Laca-Chr7:123696798 | transposed | |
| Laca | Laca-Chr4:60701607 | Laca7g02571 | Laca-Chr7:123696798 | transposed | |
| Laca | Laca-Chr8:147218810 | Laca7g02571 | Laca-Chr7:123696798 | transposed | |
| Laca | Laca-Chr7:123696798 | Laca9g03422 | Laca-Chr9:141527486 | wgd |