AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02571 ATGAAGCAATCGGGTATGACGACGACATTGATGATATTCATCGTCATAGCAATGGCAGAAATCATTAATGGAGAAGACCCTTATAGATTCTTCACCTGGAATGTTACTTATGGTGATATCTACCCTCTTGGAGTTAAACAACAGGGGATTTTGATAAATGGGCAATTTCCAGGGCCACAAATCGATTCAGTGACTAATGACAATGTGATTGTTAGTATCTACAACAGCTTGGATGAACCATTCCTCATTACCTGGAACGGGATACAACAGAGAAGGAATTCATGGCAGGATGGAGTTTATGGCACGAATTGCCCGATTCCACCAGGTCAAAACTTCACCTACATTCTTCAAGTAAAGGATCAAATCGGTAGCTTCTTCTACTTCCCTTCCCTTGCTTTTCATCGAGCTGCCGGAGGCTTCGGCGGCATCACCGTCTCCAGCCGTCCAATGATCCCGGTTCCATTCCCACCACCCGCCGGAGATTTCACCATTCTCGCCGGTGACTGGTTCAAGCAAAACCACACCGATTTGAAAGCAATTCTAGACGGAGGCCATGATCTTCCATTCCCAGATGGGCTTCTCATCAATGGCCGTGGATCTAATGGATTTACATTCACTGTTGATCAGGGGAAAACTTACAGATTGAGAATTTCGAACGTGGGGCTTACAACATCGATCAATTTCAGAATCCAAGGGCATAAGATGCTGTTAGTTGAGGTCGAAGGGACTCATGCTCTTCAGAACACATACTCTTCTCTTGATATTCATCTAGGCCAGTCGTACTCCGTTTTGGTCATCGCCGATCAACCACCGCAGGACTACTACATGGTCGTTTCAACCCGATTCACCTCTCAAGTCCTCTCCGCAACCTCCATTCTTCATTACAGTAACTCTCCGGGAACTTTTCCGGCTCCCCCACCTGGTGGCCCAACCATTCAAATCGACTGGTCTCTAAATCAAGCACGATCTATCAGACAAAACTTGACGGCGAGTGGACCGAGGCCAAACCCACAAGGCTCCTACCATTACGGAATGGTTAACTTCACTCGAACGATCAGGCTCGCAAACTCTGCTCCGATCATCAATGGAAAACAGAGGTACGCCGTCAACAGCGTCTCTTTTATTCCGGCGGACACCCCTCTGAAGATCGCTGATTACTTCAAGATCTCCGGCGTCTTTTCCATTGGAACGATCTCTGATAGCCCCACCGGTGGTGGTGGTTACCTCCAGACTTCCGTCATGGCTGCTGATTTCAGAGCATTTGCTGAGATTGTGTTTGAGAATTCCGAAGATACTGTACAATCATGGCACATTGATGGCCACTTCTTCTTCGTTGTCGGGATGGATGGAGGTCCATGGTCATCTGACAGCAGAACAAGTTACAATTTAAGAGATGGGATTTCTCGCTCTACAGTTCAGGTTTATCCGCATTCGTGGACTGCATTGTATGTGCCAATGGACAATGTGGGAATGTGGAACATAAGGTCTCAAAATTGGGCTAGACAATATCTAGGTCAACAATTTTATCTTCGGGTTTATTCGCCTGTAAATTCATGGAGAGACGAATATCCGATCCCGAAGAACGCGATTACTTGTGGGCGTGCAAGCGGTCGCAAGACTCGTCCTTTGTAA 1632 46.81 MKQSGMTTTLMIFIVIAMAEIINGEDPYRFFTWNVTYGDIYPLGVKQQGILINGQFPGPQIDSVTNDNVIVSIYNSLDEPFLITWNGIQQRRNSWQDGVYGTNCPIPPGQNFTYILQVKDQIGSFFYFPSLAFHRAAGGFGGITVSSRPMIPVPFPPPAGDFTILAGDWFKQNHTDLKAILDGGHDLPFPDGLLINGRGSNGFTFTVDQGKTYRLRISNVGLTTSINFRIQGHKMLLVEVEGTHALQNTYSSLDIHLGQSYSVLVIADQPPQDYYMVVSTRFTSQVLSATSILHYSNSPGTFPAPPPGGPTIQIDWSLNQARSIRQNLTASGPRPNPQGSYHYGMVNFTRTIRLANSAPIINGKQRYAVNSVSFIPADTPLKIADYFKISGVFSIGTISDSPTGGGGYLQTSVMAADFRAFAEIVFENSEDTVQSWHIDGHFFFVVGMDGGPWSSDSRTSYNLRDGISRSTVQVYPHSWTALYVPMDNVGMWNIRSQNWARQYLGQQFYLRVYSPVNSWRDEYPIPKNAITCGRASGRKTRPL 543
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02571 543 FunFam Monocopper oxidase-like protein 159 333 - -
Laca7g02571 543 Gene3D - 28 149 IPR008972 -
Laca7g02571 543 Pfam Multicopper oxidase 34 148 IPR011707 GO:0005507(InterPro)
Laca7g02571 543 Pfam Multicopper oxidase 379 515 IPR011706 GO:0005507(InterPro)|GO:0016491(InterPro)
Laca7g02571 543 Pfam Multicopper oxidase 161 298 IPR001117 -
Laca7g02571 543 PANTHER MULTI-COPPER OXIDASE 29 509 IPR045087 GO:0016491(PANTHER)
Laca7g02571 543 Gene3D - 160 334 IPR008972 -
Laca7g02571 543 Gene3D - 344 540 IPR008972 -
Laca7g02571 543 CDD CuRO-1-AAO-like-1 30 145 IPR034273 GO:0005507(InterPro)
Laca7g02571 543 FunFam Monocopper oxidase-like protein 345 542 - -
Laca7g02571 543 SUPERFAMILY Cupredoxins 155 335 IPR008972 -
Laca7g02571 543 SUPERFAMILY Cupredoxins 345 534 IPR008972 -
Laca7g02571 543 SUPERFAMILY Cupredoxins 24 175 IPR008972 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02571 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
116379 Laca7g02571 Laca9g03422
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr4:260255837 Laca7g02571 Laca-Chr7:123696798 dispersed
Laca Laca-Chr4:271541373 Laca7g02571 Laca-Chr7:123696798 dispersed
Laca Laca-Chr7:123696798 Laca9g01807 Laca-Chr9:47402363 dispersed
Laca Laca-Chr2:85559251 Laca7g02571 Laca-Chr7:123696798 transposed
Laca Laca-Chr4:60701607 Laca7g02571 Laca-Chr7:123696798 transposed
Laca Laca-Chr8:147218810 Laca7g02571 Laca-Chr7:123696798 transposed
Laca Laca-Chr7:123696798 Laca9g03422 Laca-Chr9:141527486 wgd