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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02572 ATGATTTACCTGTTCTTCGCGGTTTTATTCATCGAAATGTTGACGATTCTGTTACTTTTGTTCAAAACCCCACTCCGAAAGCTTTTGATAATCGGGTTAGATCGTGCGAAACGGGGAAGAGCTCCATTGGTTGTAAAATCCGTCGCCGCCACCTTCTTCATCATGATGATGTACAACGTTTACACCGTAATGGAAATCCAGAGGCGCCCCGCCGACGTCAATAATCCCACCGATCAAATCATCCTCGCTTACCACATGCTCGAAGCTGCTCTCATGGGATTCTCGCTTTTCCTATCACTAATGATAGATCGACTCCACCATTACATTCGTGAGCTTCGAATACTGAGAAAAACAATGGAAACCACAAAGAAACAAAATCGAGCAGCTGAAGAGTTTAAGAACAAAGGAGCAGATGAAGTGAGACATCTGAATGAAGAAATGATAAGAATGAGGGGAGAAATGAAGAAACTGGAAACCAAATATTCAGCAATGGAAAAAGAAGTGAAATCTGCAGAAGCCAATTCTCTTGCACTTAAGCATCAATCTGAAGGATTCCTTCTTGAATATGATCGCTTGTTGGCTGAAAACCAGAATCTTAGAGATCAACTTCGTGCCATTGATGATAGCTTGTCTCATGCCAATGGAAAGAAGGATACATGA 660 41.82 MIYLFFAVLFIEMLTILLLLFKTPLRKLLIIGLDRAKRGRAPLVVKSVAATFFIMMMYNVYTVMEIQRRPADVNNPTDQIILAYHMLEAALMGFSLFLSLMIDRLHHYIRELRILRKTMETTKKQNRAAEEFKNKGADEVRHLNEEMIRMRGEMKKLETKYSAMEKEVKSAEANSLALKHQSEGFLLEYDRLLAENQNLRDQLRAIDDSLSHANGKKDT 219
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02572 219 PANTHER BCR-ASSOCIATED PROTEIN, BAP 1 200 IPR008417 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0006886(InterPro)|GO:0006888(PANTHER)|GO:0016020(InterPro)|GO:0070973(PANTHER)
Laca7g02572 219 FunFam B-cell receptor-associated protein 29 136 199 - -
Laca7g02572 219 Pfam Virus-capping methyltransferase, C-terminal 45 119 IPR048398 -
Laca7g02572 219 Coils Coil 140 181 - -
Laca7g02572 219 Coils Coil 189 209 - -
Laca7g02572 219 Gene3D - 136 199 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02572 K14009 B-cell receptor-associated protein 31
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Event-related genes

Select Gene_1 Gene_2 Event_name
115839 Laca5g02974 Laca7g02572
116380 Laca7g02572 Laca9g03420
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:123797100 Laca9g02997 Laca-Chr9:121482514 dispersed
Laca Laca-Chr8:63312484 Laca7g02572 Laca-Chr7:123797100 transposed
Laca Laca-Chr5:187292871 Laca7g02572 Laca-Chr7:123797100 wgd
Laca Laca-Chr7:123797100 Laca9g03420 Laca-Chr9:141487544 wgd