AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02579 ATGCATCCTACTTCTCCGGCAACAGTCAGGCCACAAACTCCTCAGGTGCGAGTCGAAGAGAGTCATCCTAAGGAATTTTTCTCTGTTATCGGTGTTATCAGTAAGGGGAAATGGCACCAGGGGAAGAAGATGAGGGAGCGTCACGCAGAGCTACACATGGGTACCATATTCAAAGCAAGCTTGCTCTTGTCATTCCTGTTGTTTCTTTTCTCACCTCATGCATATTCAGCTTCTAATGGTGGATTGGTTAGAATTGGACTCAAAAAGAGAAAAATCAACCAATTAAACCAACATGATGCCTCAAATGAAGATGATTCTAGAAGAAACTCTGGTCTCCATGGCAACTTCAAGGATTCAGACACTGACATAATTTCTCTAAAAAACTACATGGATGCTCAATATTATGGTGAAATTGGTATTGGCACTCCACCTCAAAAGTTCACTGTTATTTTTGACACTGGAAGTTCTAATCTTTGGGTTCCTTCTACAAAGTGCTACTTCTCAGTTGCTTGTCTTTTACACTCAAAATATAAGTCCAGCCAATCAAGTACATATAAGAAAAATGGAAAATCTGCTGCAATTCGATATGGAACTGGTGCTATCTCTGGTTTCTTTAGCCAAGATTCTATAAGACTTGGTGATTTTACTATCAAGGAACAGGATTTCATAGAAGCAACCAAAGAGCCTGGTATCACTTTTGTTGCAGCAAAGTTTGATGGTATTCTTGGCCTTGGGTTTCAAGAAATCTCCGTTGGGGGTGCTCTTCCTGTTTGGTATAACATGGTTGACCAAGGTCTTGTTCATGAACCTGTGTTTTCATTTTGGCTTAATCGAAATACTAAAGATAATGAAGGAGGTGAACTTGTGTTTGGTGGTGTTGATACTAATCATTTCAGAGGTGAACACATTTATGTCCCTGTTACTCAAAAAGGCTACTGGCAGTTTGAAATGAATGATGTATTTATTGGAAACGAACCAAGTGGATTTTGCACCAATGGTTGTGCAGCAATTGCTGATTCTGGAACCTCTTTGTTGGTTGGTCCAACGGCTGTTGTTACTCAAATCAATCAAGCTATTGGTGCTCATGGATTAATGAGCCAAGAATGCAAGACTTTGGTTGAACAATATGGAAAGTCTATAATTGATATGCTTTTATCTGAGGCAAAACCTGAAAAAATATGCTCCCAAATGAAGTTATGCATGTTTGAAGGCTCTCATGATACTAGTATGATAATTGAAAGTGTGGTTGATAAAAATAATGGAAAATCTTCCGGTGTAAACGATGAAATGTGTACTTTCTGTGAGATGGTGGTTTTTTGGATGCAAAGGGAGCTCAAGAAAAACAAGACCGAGGATTCCATAATTAATTATGCTGACAAGCTGTGTGAGAATTTACCAAGTCCGGGGGGTCAATCTACTGTTGACTGTAAACATCTTTCTTCCATGCCGAATATTGGTTTTACTATTGGTGGTAAATCTTTTCAACTCTCCCCTCAACAGTATGTTTTGAAATTTGGTGAGGGAGCAAAAGCACAATGCATCAGTGGATTTAGTGCTCTAGATGTGCCACCTCCTCGTGGACCTCTATGGATTTTGGGAGATGTATTTATGGGTCGAATCACATAA 1626 39.36 MHPTSPATVRPQTPQVRVEESHPKEFFSVIGVISKGKWHQGKKMRERHAELHMGTIFKASLLLSFLLFLFSPHAYSASNGGLVRIGLKKRKINQLNQHDASNEDDSRRNSGLHGNFKDSDTDIISLKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTKCYFSVACLLHSKYKSSQSSTYKKNGKSAAIRYGTGAISGFFSQDSIRLGDFTIKEQDFIEATKEPGITFVAAKFDGILGLGFQEISVGGALPVWYNMVDQGLVHEPVFSFWLNRNTKDNEGGELVFGGVDTNHFRGEHIYVPVTQKGYWQFEMNDVFIGNEPSGFCTNGCAAIADSGTSLLVGPTAVVTQINQAIGAHGLMSQECKTLVEQYGKSIIDMLLSEAKPEKICSQMKLCMFEGSHDTSMIIESVVDKNNGKSSGVNDEMCTFCEMVVFWMQRELKKNKTEDSIINYADKLCENLPSPGGQSTVDCKHLSSMPNIGFTIGGKSFQLSPQQYVLKFGEGAKAQCISGFSALDVPPPRGPLWILGDVFMGRIT 541
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02579 541 ProSiteProfiles Saposin B type domain profile. 427 468 IPR008139 -
Laca7g02579 541 Pfam Saposin-like type B, region 2 367 400 IPR008138 -
Laca7g02579 541 Pfam Saposin-like type B, region 1 430 466 IPR007856 GO:0006629(InterPro)
Laca7g02579 541 ProSiteProfiles Peptidase family A1 domain profile. 134 541 IPR033121 -
Laca7g02579 541 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 65 539 IPR001461 GO:0004190(PANTHER)|GO:0004190(InterPro)|GO:0006508(PANTHER)|GO:0006508(InterPro)
Laca7g02579 541 SUPERFAMILY Saposin 365 466 IPR011001 -
Laca7g02579 541 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 336 347 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Laca7g02579 541 Pfam Eukaryotic aspartyl protease 133 538 IPR033121 -
Laca7g02579 541 Gene3D - 364 466 - -
Laca7g02579 541 MobiDBLite consensus disorder prediction 96 116 - -
Laca7g02579 541 SMART sapb-4 328 400 IPR008139 -
Laca7g02579 541 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 149 160 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Laca7g02579 541 SUPERFAMILY Acid proteases 62 539 IPR021109 -
Laca7g02579 541 Gene3D Acid Proteases 83 292 IPR021109 -
Laca7g02579 541 Gene3D Acid Proteases 293 538 IPR021109 -
Laca7g02579 541 ProSiteProfiles Saposin B type domain profile. 364 404 IPR008139 -
Laca7g02579 541 FunFam Lysosomal aspartic protease 120 362 - -
Laca7g02579 541 PRINTS Pepsin (A1) aspartic protease family signature 530 541 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Laca7g02579 541 PRINTS Pepsin (A1) aspartic protease family signature 336 347 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Laca7g02579 541 PRINTS Pepsin (A1) aspartic protease family signature 286 299 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Laca7g02579 541 PRINTS Pepsin (A1) aspartic protease family signature 140 160 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Laca7g02579 541 MobiDBLite consensus disorder prediction 96 115 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02579 K08245 phytepsin [EC:3.4.23.40]
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Event-related genes

Select Gene_1 Gene_2 Event_name
116382 Laca7g02579 Laca9g03417
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr4:68198915 Laca7g02579 Laca-Chr7:124178175 dispersed
Laca Laca-Chr7:124178175 Laca8g04181 Laca-Chr8:200261380 dispersed
Laca Laca-Chr7:124178175 Laca9g03417 Laca-Chr9:141271887 wgd