AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02594 ATGGAGAATTTGCCTGAATCGTTGTATGTGGATCCGACAGGTGGTTCTAGCTCTAATTCCGCCCCAAAGAACACCGCCAGACCACAACCACAACCACAACAGTTCTCGGCGACTGATCGTGCTGAAATTCAGCAGTTGATCAACTTGCTTAACCACCCTCAGACAAGAGCTGAGGCTATTACGCAGCTCAACAGGGTGTACACGAGGCATAAGGCAAAAGGAGGTCGTGAGCTAGGGTTGCTACTTTGGAATTCAAAATACACAATCTTTTCATTGTTGGAGGAACTTTTGGGGGTATACAAGTTGTTGTCGCCTCCTAAGCTTGGTATGGCAGAAGCTACAAGGGTTTGTAATGCACTTGCCTTGCTTCAGTGCATTGCAACTCATCCCGATACAAGACTCGACCTTCTCAAAGCCCATATACCTGTATACATTTACCCTTTTCTGAACACCACTGAGAAACAACTTGTGCACTATGATTACTTGCGAGTTAACAGCTTAGGTGTCATTGGGGCCCTTCTCAAGGAGCAATGCCCAAAAACCGATGAAATCGTTCATTATCTTTTGCAAAGTGAAATGGTTCCTTTGTGCCTCCGTTGCATGGACGTGGGTAGCGACCTCACAAAATCCGTTGCAGCATTTGTGATTGGTAAGATTTTAGGTGAACCAGAAGGAAAGACCTACTGTGGGACATTTGCAGAGAGATTTTTTTCAGTGTCCAGGGCTTTGTCAAAAATGGTGGATGAGTTTTCTGGAAAGCCGTCACCCGCGTTGTTGAAGAATACGCTAATTTGCTACCTGCGACTCTCCGAAATATCGAGGTGCTGTAACGTGTTGAAGAAACGCTACCCTGAGCGATTGAGGAACCCCGTATACCTTAACCATGTCTGTGATGGAAATACTAGAGCTCTGGCTGAACAGGTGCTACAAAACATCATGTGA 942 45.75 MENLPESLYVDPTGGSSSNSAPKNTARPQPQPQQFSATDRAEIQQLINLLNHPQTRAEAITQLNRVYTRHKAKGGRELGLLLWNSKYTIFSLLEELLGVYKLLSPPKLGMAEATRVCNALALLQCIATHPDTRLDLLKAHIPVYIYPFLNTTEKQLVHYDYLRVNSLGVIGALLKEQCPKTDEIVHYLLQSEMVPLCLRCMDVGSDLTKSVAAFVIGKILGEPEGKTYCGTFAERFFSVSRALSKMVDEFSGKPSPALLKNTLICYLRLSEISRCCNVLKKRYPERLRNPVYLNHVCDGNTRALAEQVLQNIM 313
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02594 313 MobiDBLite consensus disorder prediction 10 36 - -
Laca7g02594 313 PANTHER UNCHARACTERIZED 23 312 IPR007216 GO:0000932(PANTHER)|GO:0006402(InterPro)|GO:0017148(PANTHER)|GO:0030014(InterPro)|GO:0030015(PANTHER)
Laca7g02594 313 MobiDBLite consensus disorder prediction 1 36 - -
Laca7g02594 313 SUPERFAMILY ARM repeat 116 273 IPR016024 -
Laca7g02594 313 Gene3D - 35 313 IPR011989 -
Laca7g02594 313 Pfam Cell differentiation family, Rcd1-like 47 312 IPR007216 GO:0006402(InterPro)|GO:0030014(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02594 K12606 CCR4-NOT transcription complex subunit 9
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr5:3739681 Laca7g02594 Laca-Chr7:124703523 dispersed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Laca Rcd1 1.3e-75 No_clan TR Rcd1-like