Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Laca7g02594 | ATGGAGAATTTGCCTGAATCGTTGTATGTGGATCCGACAGGTGGTTCTAGCTCTAATTCCGCCCCAAAGAACACCGCCAGACCACAACCACAACCACAACAGTTCTCGGCGACTGATCGTGCTGAAATTCAGCAGTTGATCAACTTGCTTAACCACCCTCAGACAAGAGCTGAGGCTATTACGCAGCTCAACAGGGTGTACACGAGGCATAAGGCAAAAGGAGGTCGTGAGCTAGGGTTGCTACTTTGGAATTCAAAATACACAATCTTTTCATTGTTGGAGGAACTTTTGGGGGTATACAAGTTGTTGTCGCCTCCTAAGCTTGGTATGGCAGAAGCTACAAGGGTTTGTAATGCACTTGCCTTGCTTCAGTGCATTGCAACTCATCCCGATACAAGACTCGACCTTCTCAAAGCCCATATACCTGTATACATTTACCCTTTTCTGAACACCACTGAGAAACAACTTGTGCACTATGATTACTTGCGAGTTAACAGCTTAGGTGTCATTGGGGCCCTTCTCAAGGAGCAATGCCCAAAAACCGATGAAATCGTTCATTATCTTTTGCAAAGTGAAATGGTTCCTTTGTGCCTCCGTTGCATGGACGTGGGTAGCGACCTCACAAAATCCGTTGCAGCATTTGTGATTGGTAAGATTTTAGGTGAACCAGAAGGAAAGACCTACTGTGGGACATTTGCAGAGAGATTTTTTTCAGTGTCCAGGGCTTTGTCAAAAATGGTGGATGAGTTTTCTGGAAAGCCGTCACCCGCGTTGTTGAAGAATACGCTAATTTGCTACCTGCGACTCTCCGAAATATCGAGGTGCTGTAACGTGTTGAAGAAACGCTACCCTGAGCGATTGAGGAACCCCGTATACCTTAACCATGTCTGTGATGGAAATACTAGAGCTCTGGCTGAACAGGTGCTACAAAACATCATGTGA | 942 | 45.75 | MENLPESLYVDPTGGSSSNSAPKNTARPQPQPQQFSATDRAEIQQLINLLNHPQTRAEAITQLNRVYTRHKAKGGRELGLLLWNSKYTIFSLLEELLGVYKLLSPPKLGMAEATRVCNALALLQCIATHPDTRLDLLKAHIPVYIYPFLNTTEKQLVHYDYLRVNSLGVIGALLKEQCPKTDEIVHYLLQSEMVPLCLRCMDVGSDLTKSVAAFVIGKILGEPEGKTYCGTFAERFFSVSRALSKMVDEFSGKPSPALLKNTLICYLRLSEISRCCNVLKKRYPERLRNPVYLNHVCDGNTRALAEQVLQNIM | 313 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Laca7g02594 | 313 | MobiDBLite | consensus disorder prediction | 10 | 36 | - | - | |
| Laca7g02594 | 313 | PANTHER | UNCHARACTERIZED | 23 | 312 | IPR007216 | GO:0000932(PANTHER)|GO:0006402(InterPro)|GO:0017148(PANTHER)|GO:0030014(InterPro)|GO:0030015(PANTHER) | |
| Laca7g02594 | 313 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Laca7g02594 | 313 | SUPERFAMILY | ARM repeat | 116 | 273 | IPR016024 | - | |
| Laca7g02594 | 313 | Gene3D | - | 35 | 313 | IPR011989 | - | |
| Laca7g02594 | 313 | Pfam | Cell differentiation family, Rcd1-like | 47 | 312 | IPR007216 | GO:0006402(InterPro)|GO:0030014(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Laca7g02594 | K12606 | CCR4-NOT transcription complex subunit 9 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Laca | Laca-Chr5:3739681 | Laca7g02594 | Laca-Chr7:124703523 | dispersed |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Laca | Rcd1 | 1.3e-75 | No_clan | TR | Rcd1-like |