AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02600 ATGACGGCAAAGAAGAGATTTGCTGCCGTTGCTTCGAGACGCCAGATTCCGCCGTTTGTTTCCAAGTTTGTGATCTCATTGTTGGTACTGTTTTGCTTCGTCGTCTTTTTCGGACTCTTCTCGCAATTCAAGCTTCAGTCGTCGTCTGTATCTACTGAATTCGGTTTTGATGAGTTTCGCCTCGAAGATTATCGTATGAAGATTGCTTTCCTTTTCCTTGTTCGAGATAATCTTCCTCTTGATTTCCTATGGCACAACTTCTTTAAGAATGCAGATCCTGAAAATTTCACCATTTACATACACTCTAAGCCTGGTTTTGTATTCGATGAATCTGTTACAAGATCAGCCTTCTTCTACAATCGACAGTTGAAAAACAGTGTTGAGGTGGGTTGGGGTAAACCAACCATGATTGAAGCAGAGAAGCTATTATTCAAAGCAGCCCTTGAAGATACTAATAATCAGATATTCATACTCCTCTCTGACAGTTGTGTCCCACTATATAATTTCAGTTATATATACAGATATATAATGTCATCTCCAAGAAGCTTTGTGGACAGCTTTATTGATGATGCCACAGAAAAACGTTATAATCCAGAAATGTCCCCTGACATACCTGAAGACAAATGGCGGAAAGGATCCCAGTGGATTACATTGGTTAGAAGACACGCAGAGGTTGTTGCTTATGATCATGTTGTTTTCCCCATCTTTAACAAACACTGCAAGAGGCGACCACTTTTAGACTTGAGCAAAGGAAACGAGTCTCTTAAAGAGCAACAGCAACACAATTGCATCCCAGATGAACATTATGTTCCCACCTTACTTGAGATGCGGGGGATTGAAGGTGAATTGTTGAGAAGAACATTAACATATTCTTTATGGAACCAATCAACAGAAACAATGAATACATTAGCTTGGCACCCTGTAACATTTGGTTACACAAGTGCTAGCCAAAAAAATATCCAAGCTATCAAGGATATTGACCGTGTTTATTTCAAGTCTGAGAACCGGACGGAATGGTGTGGCGGTCCTTGTTACTTATTTGCAAGGAAGTTTTCACGTGGGGCCGCCATGCGTGTTTTGACAAATGGGTTGGTGGGCCCGTATGACCCCAAAACGGTGTTCCTGGACCCCACATAG 1137 41.42 MTAKKRFAAVASRRQIPPFVSKFVISLLVLFCFVVFFGLFSQFKLQSSSVSTEFGFDEFRLEDYRMKIAFLFLVRDNLPLDFLWHNFFKNADPENFTIYIHSKPGFVFDESVTRSAFFYNRQLKNSVEVGWGKPTMIEAEKLLFKAALEDTNNQIFILLSDSCVPLYNFSYIYRYIMSSPRSFVDSFIDDATEKRYNPEMSPDIPEDKWRKGSQWITLVRRHAEVVAYDHVVFPIFNKHCKRRPLLDLSKGNESLKEQQQHNCIPDEHYVPTLLEMRGIEGELLRRTLTYSLWNQSTETMNTLAWHPVTFGYTSASQKNIQAIKDIDRVYFKSENRTEWCGGPCYLFARKFSRGAAMRVLTNGLVGPYDPKTVFLDPT 378
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02600 378 PANTHER CORE-2-I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 36 360 IPR044174 GO:0016757(InterPro)
Laca7g02600 378 Pfam Core-2-I-Branching enzyme 68 323 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02600 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr1:60194622 Laca7g02600 Laca-Chr7:124780833 dispersed
Laca Laca-Chr3:111222063 Laca7g02600 Laca-Chr7:124780833 dispersed
Laca Laca-Chr7:11294099 Laca7g02600 Laca-Chr7:124780833 dispersed
Laca Laca-Chr7:124780833 Laca9g00969 Laca-Chr9:22935889 dispersed
Laca Laca-Chr7:124780833 Laca1g01092 Laca-Chr1:28227033 transposed