AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02613 ATGGAAGACACACCGGCAACCAACATCGGCGGAGACGCTCACCAGGAAATGATCGCAGCATTCTCAGAGATTACTTCAGCTACCAAAGAAGAAGCCTCCTTCTTCCTCGAATCGCACAACTTCGATCTCGATTCCGCCGTCTCCACCTTCTTCGAAACCGCTGCCGCCGTAGAAGAGGCTCCTGTGTCTGCCTTACCTGGCCGAAACCCTAACCGGCCTTCTGATACACATTCCCCTTCATTCTCTCCGTCGTCTTCTCCGTCTCGCTCCCGATCAGCCTCCCCACCTCCTGCTATTGGTTTACAAAATCCTTACAATCTACGATCTAGGAACACCGCTACGGATAAGAAGCCATCAGGTAGTCGGTCTACCGGACGCATACGGACTTTCTCAGATCTGAATCGACAGGGTAATGACTCCGGAAGTGACTCCGATGAGCCCCAGGAGTATTATACCGGTGGTGAAAAGAGTGGAATGCTTGTTCAAGATCCATCAAAGGTGAATGATGTGGAATCATTGTTCAATCAAGCTCGACAAGCAGGAGCAGAAGAAGGAACACTTGAACAACTCCAACCATCTTCAAGCTCCAGAAGCTTTGCAGGAAGAGGAAGATTACTATCTGGAGAGACAACATCAGCCACTCCTCAAGTCTCTGAACCTGATGTTCATACTCACACCATAACTTTCTGGACCAATGGTTTCACTGTTAACGATGGTCCTTTGAGAAGACTCGATGATCCCCAAAATGCATCTTTCTTGGAGAGCATTAGGAAGTCTGAATGTCCAGAAGAGCTTAGGCCTGCAAAAGGAAGAGCTCCTGTTCATGTCAGTCTTGTGAGGAAGCTTGAAGACTACCCTGTTCAGAAACAACGCCACACCGCGTTTGTGGGTGTGGGTAGAACCCTAGGCACCACCACCACCACTTCATCAGAAGACGCCACCATCACACCGCCGCCTGCCACCGCTGCACCAACCCCACTGGCGGGGCTAGTGGTGGATGACGCACTACCTTCAACCTCTATTCAACTGAGATTGGGCGATGGGACCCGTATGGTTTCTAGATTCAATTTCCACCACACGATTGGTGATATCCGATCTTTCATTGATGCATCAAGGCCTGGAGGGTCTAGGGTTTATCAGCTTTTGACAATGGGGTTCCCGCCAAAGCAGCTTAATGATTTGAATCAGACAATTGAAGGAGCTGGGTTAGCGAATTCAGTTGTGATACAGAAACTCTAG 1239 49.56 MEDTPATNIGGDAHQEMIAAFSEITSATKEEASFFLESHNFDLDSAVSTFFETAAAVEEAPVSALPGRNPNRPSDTHSPSFSPSSSPSRSRSASPPPAIGLQNPYNLRSRNTATDKKPSGSRSTGRIRTFSDLNRQGNDSGSDSDEPQEYYTGGEKSGMLVQDPSKVNDVESLFNQARQAGAEEGTLEQLQPSSSSRSFAGRGRLLSGETTSATPQVSEPDVHTHTITFWTNGFTVNDGPLRRLDDPQNASFLESIRKSECPEELRPAKGRAPVHVSLVRKLEDYPVQKQRHTAFVGVGRTLGTTTTTSSEDATITPPPATAAPTPLAGLVVDDALPSTSIQLRLGDGTRMVSRFNFHHTIGDIRSFIDASRPGGSRVYQLLTMGFPPKQLNDLNQTIEGAGLANSVVIQKL 412
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02613 412 MobiDBLite consensus disorder prediction 61 162 - -
Laca7g02613 412 Pfam UBX domain 337 411 IPR001012 GO:0005515(InterPro)
Laca7g02613 412 FunFam Plant UBX domain-containing protein 4 287 412 - -
Laca7g02613 412 Gene3D SEP domain 222 284 IPR036241 -
Laca7g02613 412 FunFam Plant UBX domain-containing protein 4 222 284 - -
Laca7g02613 412 Gene3D - 287 412 - -
Laca7g02613 412 CDD UBX-UBXN2 340 411 - -
Laca7g02613 412 MobiDBLite consensus disorder prediction 302 322 - -
Laca7g02613 412 MobiDBLite consensus disorder prediction 181 202 - -
Laca7g02613 412 SMART faf-3 218 312 IPR012989 -
Laca7g02613 412 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 219 307 IPR036241 -
Laca7g02613 412 Gene3D - 12 54 - -
Laca7g02613 412 MobiDBLite consensus disorder prediction 186 202 - -
Laca7g02613 412 SUPERFAMILY Ubiquitin-like 295 410 IPR029071 -
Laca7g02613 412 SUPERFAMILY UBA-like 13 52 IPR009060 GO:0005515(InterPro)
Laca7g02613 412 MobiDBLite consensus disorder prediction 69 147 - -
Laca7g02613 412 ProSiteProfiles UBX domain profile. 334 411 IPR001012 GO:0005515(InterPro)
Laca7g02613 412 ProSiteProfiles SEP domain profile. 222 286 IPR012989 -
Laca7g02613 412 MobiDBLite consensus disorder prediction 302 316 - -
Laca7g02613 412 Pfam UBA-like domain 15 54 - -
Laca7g02613 412 PANTHER UBX DOMAIN CONTAINING PROTEIN 13 411 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Laca7g02613 412 Pfam SEP domain 227 300 IPR012989 -
Laca7g02613 412 SMART ubx-3 333 412 IPR001012 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02613 K14012 UBX domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:10934041 Laca7g02613 Laca-Chr7:125101045 dispersed
Laca Laca-Chr7:69029739 Laca7g02613 Laca-Chr7:125101045 dispersed
Laca Laca-Chr7:125101045 Laca8g02998 Laca-Chr8:115094683 dispersed