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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02629 ATGAAACTAGACCAAGAACTCAACCAACACGGCCGTGACATCATCAGAACCATCGAAGTAGTTCAATCTGTCACCAAGCTATCAACCACCGCCGTTGATAACTTCGATTCGAATGGGGAAGAGCTCTACACGCCTCCGCTTAATTTCTCCATGGTTGATAATGGCATATTCCGTTCAGGATTCCCCGATACCGCTAACTTCTCGTTTCTCAAAACCCTAGGCCTTCGCTCCATCGTATATTTGTGTCCTGAACCATATCCGGAGCATAACATGGAATTTCTGAAGGCTAATCGGATCCAATTGTTTCAATTCGGAATTGAAGGCACCAAGGAACCTTTTGTTAATATCCCAGAGGACACAATCCGTGAAGCATTAAAAGTTGTTCTAGATGTAAGAAATCACCCATTGTTGATTCATTGCAAAAGAGGCAAGCATCGAACTGGTTGTTTAGTGGGATGCTTGAGAAAAATACAGAGATGGTGTTTGACATCTATTTTTGATGAGTATCAAAGGTTTGCAGCAGCTAAGGCTAGGGTTTCAGATCAAAGGTTTATGGAGTTATTTGATGCCTCTGGGTTTAAGGATATTCCACCATCTCCATGTTCATGTACCAAAAGGAGGTAA 624 42.31 MKLDQELNQHGRDIIRTIEVVQSVTKLSTTAVDNFDSNGEELYTPPLNFSMVDNGIFRSGFPDTANFSFLKTLGLRSIVYLCPEPYPEHNMEFLKANRIQLFQFGIEGTKEPFVNIPEDTIREALKVVLDVRNHPLLIHCKRGKHRTGCLVGCLRKIQRWCLTSIFDEYQRFAAAKARVSDQRFMELFDASGFKDIPPSPCSCTKRR 207
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02629 207 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 43 189 IPR029021 -
Laca7g02629 207 ProSitePatterns Tyrosine specific protein phosphatases active site. 138 148 IPR016130 GO:0016311(InterPro)
Laca7g02629 207 ProSiteProfiles Dual specificity protein phosphatase domain profile. 48 199 IPR020422 GO:0006470(InterPro)
Laca7g02629 207 Pfam Tyrosine phosphatase family 45 195 IPR004861 -
Laca7g02629 207 CDD PFA-DSP-Siw14 42 189 - -
Laca7g02629 207 PANTHER TYROSINE-PROTEIN PHOSPHATASE 38 198 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Laca7g02629 207 FunFam probable tyrosine-protein phosphatase At1g05000 42 192 - -
Laca7g02629 207 PRINTS Plant and fungal dual specificity phosphatase signature 116 130 IPR020428 GO:0016791(InterPro)
Laca7g02629 207 PRINTS Plant and fungal dual specificity phosphatase signature 99 113 IPR020428 GO:0016791(InterPro)
Laca7g02629 207 PRINTS Plant and fungal dual specificity phosphatase signature 43 60 IPR020428 GO:0016791(InterPro)
Laca7g02629 207 PRINTS Plant and fungal dual specificity phosphatase signature 80 93 IPR020428 GO:0016791(InterPro)
Laca7g02629 207 Gene3D Protein tyrosine phosphatase superfamily 43 192 IPR029021 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02629 K18045 tyrosine-protein phosphatase SIW14 [EC:3.1.3.48]
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Event-related genes

Select Gene_1 Gene_2 Event_name
116386 Laca7g02629 Laca9g03404
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr2:23089566 Laca7g02629 Laca-Chr7:126249531 dispersed
Laca Laca-Chr7:10585231 Laca7g02629 Laca-Chr7:126249531 dispersed
Laca Laca-Chr7:126249531 Laca9g03404 Laca-Chr9:140388963 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lacanog00237 . 21 190 Protein tyrosine phosphatase (PTP) family AT3G23610 62.353 5.50e-77 226.0
Lacanog00460 . 34 227 Protein tyrosine phosphatase (PTP) family AT5G56610 71.282 1.06e-100 292.0
Lacanog02284 . 1 257 Protein tyrosine phosphatase (PTP) family AT2G04550 60.727 1.43e-107 310.0
Lacanog02962 . 906 966 Protein tyrosine phosphatase (PTP) family AT5G58160 51.613 3.60e-12 60.8
Lacanog04423 . 3 191 Protein tyrosine phosphatase (PTP) family AT1G71860 58.247 2.92e-63 200.0
Lacanog04424 . 36 316 Protein tyrosine phosphatase (PTP) family AT1G71860 54.737 8.59e-100 296.0
Lacanog04652 . 313 335 Protein tyrosine phosphatase (PTP) family AT3G19420 78.261 1.49e-08 50.4
Lacanog04653 . 133 253 Protein tyrosine phosphatase (PTP) family AT3G19420 77.686 2.08e-66 212.0
Lacanog05499 . 681 722 Protein tyrosine phosphatase (PTP) family AT5G23720 69.048 1.10e-11 64.3
Lacanog06714 . 1174 1202 Protein tyrosine phosphatase (PTP) family AT5G58160 72.414 2.07e-06 47.0
Laca1g00916 ACH 459 536 Protein tyrosine phosphatase (PTP) family AT3G01510 35.443 2.36e-06 46.2
Laca1g01393 . 906 973 Protein tyrosine phosphatase (PTP) family AT5G58160 55.072 9.90e-15 67.8
Laca1g01891 . 18 239 Protein tyrosine phosphatase (PTP) family AT3G44620 63.362 4.47e-96 279.0
Laca2g00448 . 17 191 Protein tyrosine phosphatase (PTP) family AT3G02800 66.286 3.06e-86 251.0
Laca2g02358 . 62 590 Protein tyrosine phosphatase (PTP) family AT3G01510 72.693 0.0 803.0
Laca2g02708 . 1 372 Protein tyrosine phosphatase (PTP) family AT3G52180 60.428 2.35e-153 435.0
Laca2g02716 ACH 20 840 Protein tyrosine phosphatase (PTP) family AT3G10550 63.745 0.0 1065.0
Laca2g03377 . 30 282 Protein tyrosine phosphatase (PTP) family AT3G10940 72.308 1.00e-139 393.0
Laca3g00878 . 61 462 Protein tyrosine phosphatase (PTP) family AT3G55270 58.025 1.49e-170 506.0
Laca3g02412 . 59 611 Protein tyrosine phosphatase (PTP) family AT3G19420 63.669 0.0 715.0
Laca3g02587 . 19 395 Protein tyrosine phosphatase (PTP) family AT5G39400 59.682 2.94e-164 469.0
Laca3g02591 . 39 396 Protein tyrosine phosphatase (PTP) family AT5G39400 52.632 7.19e-132 381.0
Laca3g02592 . 39 396 Protein tyrosine phosphatase (PTP) family AT5G39400 52.078 4.62e-123 358.0
Laca3g02594 . 36 395 Protein tyrosine phosphatase (PTP) family AT5G39400 51.389 5.51e-121 353.0
Laca3g03056 . 53 396 Protein tyrosine phosphatase (PTP) family AT5G39400 48.547 1.27e-107 317.0
Laca3g03471 . 1 321 Protein tyrosine phosphatase (PTP) family AT2G35680 54.294 2.02e-112 326.0
Laca4g01729 . 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 35.714 5.31e-07 48.9
Laca4g02337 . 85 165 Protein tyrosine phosphatase (PTP) family AT3G09100 65.854 1.24e-30 117.0
Laca4g02368 . 1 915 Protein tyrosine phosphatase (PTP) family AT5G23720 63.373 0.0 1129.0
Laca4g02540 . 906 982 Protein tyrosine phosphatase (PTP) family AT5G58160 54.43 1.49e-14 68.6
Laca4g02580 . 991 1082 Protein tyrosine phosphatase (PTP) family AT5G58160 43.269 5.15e-16 79.3
Laca5g00256 ACH 459 536 Protein tyrosine phosphatase (PTP) family AT3G01510 36.709 8.79e-07 48.5
Laca5g01269 . 265 373 Protein tyrosine phosphatase (PTP) family AT3G52180 37.719 6.65e-08 52.8
Laca5g01722 . 1138 1187 Protein tyrosine phosphatase (PTP) family AT5G58160 74.0 1.42e-18 78.2
Laca5g02090 ACH 1 398 Protein tyrosine phosphatase (PTP) family AT5G58160 68.75 0.0 613.0
Laca5g03939 . 49 186 Protein tyrosine phosphatase (PTP) family AT3G23610 34.483 2.40e-18 80.9
Laca6g00970 . 475 565 Protein tyrosine phosphatase (PTP) family AT3G01510 65.591 2.34e-41 141.0
Laca6g01138 . 136 168 Protein tyrosine phosphatase (PTP) family AT3G09100 60.606 2.96e-07 46.2
Laca6g01522 . 76 159 Protein tyrosine phosphatase (PTP) family AT3G01510 29.762 1.94e-07 50.8
Laca6g01812 . 16 275 Protein tyrosine phosphatase (PTP) family AT2G35320 56.981 1.49e-110 322.0
Laca7g00417 . 54 203 Protein tyrosine phosphatase (PTP) family AT1G05000 67.105 2.11e-74 221.0
Laca7g01132 . 35 327 Protein tyrosine phosphatase (PTP) family AT2G35680 53.584 2.18e-102 300.0
Laca7g02513 . 39 399 Protein tyrosine phosphatase (PTP) family AT5G39400 53.425 3.50e-131 379.0
Laca7g02629 ACH 20 215 Protein tyrosine phosphatase (PTP) family AT1G05000 73.096 1.77e-101 290.0
Laca7g02935 . 292 360 Protein tyrosine phosphatase (PTP) family AT3G09100 52.174 2.34e-18 80.1
Laca8g00538 . 1 784 Protein tyrosine phosphatase (PTP) family AT3G55270 50.547 0.0 725.0
Laca8g00690 ACH 6 840 Protein tyrosine phosphatase (PTP) family AT3G10550 65.416 0.0 1136.0
Laca8g01603 . 457 536 Protein tyrosine phosphatase (PTP) family AT3G01510 37.5 7.98e-07 49.7
Laca8g02678 ACH 1 373 Protein tyrosine phosphatase (PTP) family AT5G58160 53.968 1.38e-143 450.0
Laca8g04004 . 910 982 Protein tyrosine phosphatase (PTP) family AT5G58160 50.0 1.46e-11 60.8
Laca9g00191 . 1 653 Protein tyrosine phosphatase (PTP) family AT5G01290 54.748 0.0 703.0
Laca9g02433 . 1 374 Protein tyrosine phosphatase (PTP) family AT3G52180 60.477 4.32e-158 447.0
Laca9g03404 ACH 12 204 Protein tyrosine phosphatase (PTP) family AT1G05000 67.358 9.79e-91 263.0
Laca9g03521 . 27 611 Protein tyrosine phosphatase (PTP) family AT3G19420 68.519 0.0 805.0