AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02640 ATGGGTTGGGCTCTAATTCTACACTTGTATGCTTTCCTGATCTCCACGCAAAGACAACCTTCTACCAACACCACCGGCGCCCGTCGGGGAACCACTGTGCTCCTCCAGATGGATGTACTCTTCAATTCAATCGACGTCCGGGATTTGTTATCGTCACATGATCTAGACGACTCTTCACCGCTCTCCGCCCCCGATCTCCGCCTCCTCATCGACCGTCTCCAAGTCCGTTCACTCGACATTAAGTCCAAAGTCCACAATTACATACTTGCTAACAATGATGACTTCTCTGCCCTATTCTCTCGCTGCTCCGACGCTGTTATTAATTCTGAGCAACTATCCGATCAAGTATCTAACCTTGTTGGTCTGTTATCATCGAATCTTCAACCGATCGATCTGAAAATCAAAGAAACAGTCGATGAGATTAGGAGGAAACGTGTTGAATCGAAAGAGAAGAAGGAAGCGCTAGATTTAGTTAAGGTAGTGTTGAAATTGAGCCAACAGTTGAGTGTTGTGGAGAGTGATTTGATGGCGGGAAAGGTCGTTGAGGCTGCAGAGGCTCTTACGGACTTGAAAGTGGCTTTACGAGTTAGAGATAATGTGGAGGATCTCAGGGAAGAAAGAGAGCCATTAGTATTTGGTTTGTTAAGGAAGAAATGGACAGATTGCTTCGAAGAGATACAAAATGTGCTAGTGAAGTTCATGGAGAATGCAGTGAGATTCGATCAGCAGTCCAATGCAGTTTATGTCAAAAATAGAATGGCTATGAATGACAATCAAGGGGTTGAGCTTTGTACTGTTGTGAAAGCAATGCATGTAGTTGGTATTCTAGATTATGGGCTTGCAAAAGTAGCAGACATGATGACCAGGCATGTGATAGCACCTGCAGTGCGCTCTGGTTCTCATAGTTTCTCTGTAGAAGAAAAAAGACTAGATTCAGGATATATAGCTGAGGTAGTTTTGAGAATAACCCCACCTTCTGATTCTCAGATTGAGAACATGGATGCTGAAACTATCTATTCTGGAATTAATGTTGTGATTCAATTCATTTTCAACTTTATCTGCTTTCAAGATTCTTCCTGGATGCGATACTTTGGAAGATTAACATGGCCCCGAATGTCAGAATTGATTATCTCTAATTTCCTTTCCAAGATTGTTCCCACTGATGCTTCCAAACTTGCTGACTTTCAAACAACAAGACAACTCACATCTGACTTTGAGGCATCTCTTAAACAAGTTATGTTCATCTCCCCTGGGAAAGATGAAAGGTTGACTAATTTTGCTGACAATGTTGAAGTTCACTTTGCAATGAGGAAAAAGGTTGAGATTTTAGCATCAGCAAGAGACCTCCTTCTACATTCAGATTTTAATCTTCCTAAAGACTATTCAAGGAAAAATACAGAGCTTAAAAATGGTGGAAACACAGACTTACTTTTTTCCTCTGAAAAATGTGTCATTTCTGAAGCAGCTTCTCGTCTAATGGAAGTTGTCCATGAAACACTAAAGGATGTTTGTTTATCATCTGCAACAGTGGCTTTAGAATTCTACCATGCTGCTAGGGATGCTCTACTTCTTTATGAAGCTGTTATTCCAGTCAAGTTAGAAAGACAGCTGGATGGAATCAACCAGGTTGCTGTTCTTATTCATAATGATTGTCTTTACCTTTCACAAGAGATTCTTGGCCTTGCTTTTGAGTATAAGTCGGATTTCCCAATTTCCATGAAGGGAGCTGTGTTTATTGATTTGGGTGTAAGATACAAGATTATGGCAGAAGAGATATTACAGAGACAGATACAGCTTGTTAAACATAATTTAATGGAGGCGATTGATGGGGCTGATGGATTTCAAAATACGCATCAACCAAAAAGATGTGAATCTGCAAAATTTAGTATTGATCAGGTGGCTTTTATACTGGAGAAAGTTCACATAATATGGGAGCCACTTTTGCTTCCTTTGACATACAAAGGAAGTATGTGTAGTGTTGTGGAGGCTGTTTGTTCTAGAATGACAAAAGATATACTCATGTTAGATGACATTGCAGCTGAAGAAACCTTACAGCTTCAAAGGTTGATTCATATGCTGCTGGAAAACCTTTCTTCTTTAATGGAATCCTTGATTGCCATCAATCAAACAACAAAGCCACAAGAGAAGTCATCAGGCTCTGTTAATGATCTAATTCCATCACTCCCTAGACTACGGATATTAGCAGATATGTTGGACATGCCTTTGAAGTCCATTACTGCATCATGGGAAAGTGGTGAGCTGGCAAAGTGTGGCTATACTTCATCTGAGATGAGGGACTTTATCAGAGCGATATTTACCGATTCCCCCCTACGGAAAGAATGCTTGTGGAGAATTGAAAATATCACATTTTAG 2373 40.5 MGWALILHLYAFLISTQRQPSTNTTGARRGTTVLLQMDVLFNSIDVRDLLSSHDLDDSSPLSAPDLRLLIDRLQVRSLDIKSKVHNYILANNDDFSALFSRCSDAVINSEQLSDQVSNLVGLLSSNLQPIDLKIKETVDEIRRKRVESKEKKEALDLVKVVLKLSQQLSVVESDLMAGKVVEAAEALTDLKVALRVRDNVEDLREEREPLVFGLLRKKWTDCFEEIQNVLVKFMENAVRFDQQSNAVYVKNRMAMNDNQGVELCTVVKAMHVVGILDYGLAKVADMMTRHVIAPAVRSGSHSFSVEEKRLDSGYIAEVVLRITPPSDSQIENMDAETIYSGINVVIQFIFNFICFQDSSWMRYFGRLTWPRMSELIISNFLSKIVPTDASKLADFQTTRQLTSDFEASLKQVMFISPGKDERLTNFADNVEVHFAMRKKVEILASARDLLLHSDFNLPKDYSRKNTELKNGGNTDLLFSSEKCVISEAASRLMEVVHETLKDVCLSSATVALEFYHAARDALLLYEAVIPVKLERQLDGINQVAVLIHNDCLYLSQEILGLAFEYKSDFPISMKGAVFIDLGVRYKIMAEEILQRQIQLVKHNLMEAIDGADGFQNTHQPKRCESAKFSIDQVAFILEKVHIIWEPLLLPLTYKGSMCSVVEAVCSRMTKDILMLDDIAAEETLQLQRLIHMLLENLSSLMESLIAINQTTKPQEKSSGSVNDLIPSLPRLRILADMLDMPLKSITASWESGELAKCGYTSSEMRDFIRAIFTDSPLRKECLWRIENITF 790
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02640 790 PANTHER CENTROMERE-KINETOCHORE PROTEIN ZW10 40 787 - GO:0006888(PANTHER)|GO:0007094(PANTHER)|GO:1990423(PANTHER)
Laca7g02640 790 Pfam ZW10 C-terminal helical domain 629 785 - -
Laca7g02640 790 Pfam Centromere-kinetochore protein zw10, middle domain 215 450 IPR048344 -
Laca7g02640 790 Gene3D - 583 789 IPR046362 -
Laca7g02640 790 Pfam Centromere-kinetochore Zw10 N-terminal 73 168 IPR009361 GO:0000278(InterPro)|GO:0000775(InterPro)|GO:0005634(InterPro)
Laca7g02640 790 Pfam Centromere-kinetochore protein zw10, C-terminal 478 606 IPR048343 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02640 K11578 protein transport protein DSL1/ZW10