AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02647 ATGCAATTCTCCATGACAATTACAACCCCAAGCTTCCCATCTTTACCCCCATTCCACCATTCCACTTCCCATCCCCCTTCATACAAACACCCTCCTATCACAATTCTTCAAAACCCAACAAAACCCCATGACAATTCCATAAAATCCCTAAAAAATTCCGGGTTTTTATCAGCAATTGGAAACGCAATCGAAGAACAAGAGTATCGGAAAGCTAGGGCTGAGGTTATCCGAAAAGGAACAGGGTTAGAAGGTTACACAATTGAGGGTCTTTCAATCGGAGGTCATGAAACTTGTGTAATTGTTCCTGAATTGAAGTGCGCATTTGATATCGGAAGGTGTCCTGCTAGAGCAGTCGCCATGAATTTCTTGTTTATTACTCATGCTCACCTTGATCACATTGGTGGGCTACCCATGTATGTAGCAACTCGTGGATTGTACAGCTTGACTCCTCCTACTGTATTTGTTCCTCCTGCCATTAAAGACGATGTTGAAAATTTGATGGAGCTTCATAGGAAGATGGGAATGGTAGAGTTAAATCTTGATTTGGTTGCATTGGATGTAGGAGAAACATATGAGTTACGAAATGACCTTGTTGTACGCCCGTTTAAAACTCACCATGTGATACCCAGTCAGGGTTATGTTGTTTACTCGGTTCGCAAGAAGCTAAAAAAGCAATACGAACATCTAAAAGGAAGGGAGATTGAGAAAAAGAAAAAATCCGGTGTTGAGATAACCGATATCATATTATCCCCGGAGGTGGCATTCACCGGAGATACAACTTCTGACTTTCTACTTGATCCAAGAAGTTCCGATGCCTTGAGGGCCAAAGTTCTCATAACCGAGGCGACTTTTTTGGACGACAAATGCAACATCGAGCATGCACGAGAACATGGTCACATGCATATTGATGAGATTATGGAGCATGCTAAGTGGATCCGAAACAAATCCATTCTTTTGACTCATTTTTCTTCACGTTACCATATTGAGGAAATTCGTCAAGCTGTAGCAAAATTGCAATCGAAGGTTTCGGGGAAAGTTGTTCCTCTTACAGAAGGTTTTAGGTCAATGTACACATCATAA 1080 41.57 MQFSMTITTPSFPSLPPFHHSTSHPPSYKHPPITILQNPTKPHDNSIKSLKNSGFLSAIGNAIEEQEYRKARAEVIRKGTGLEGYTIEGLSIGGHETCVIVPELKCAFDIGRCPARAVAMNFLFITHAHLDHIGGLPMYVATRGLYSLTPPTVFVPPAIKDDVENLMELHRKMGMVELNLDLVALDVGETYELRNDLVVRPFKTHHVIPSQGYVVYSVRKKLKKQYEHLKGREIEKKKKSGVEITDIILSPEVAFTGDTTSDFLLDPRSSDALRAKVLITEATFLDDKCNIEHAREHGHMHIDEIMEHAKWIRNKSILLTHFSSRYHIEEIRQAVAKLQSKVSGKVVPLTEGFRSMYTS 359
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02647 359 Gene3D - 85 354 IPR036866 -
Laca7g02647 359 PANTHER TRNASE Z TRZ1 43 353 - -
Laca7g02647 359 Pfam Beta-lactamase superfamily domain 119 322 IPR001279 -
Laca7g02647 359 SUPERFAMILY Metallo-hydrolase-oxidoreductase 119 337 IPR036866 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02647 K00784 ribonuclease Z [EC:3.1.26.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr4:143560111 Laca7g02647 Laca-Chr7:126944965 dispersed