AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02662 ATGTTCTTAGCGTTAAAGAACCGTTATCTTTCAAGAATTTTTCACTTTCCCCAACAAAAGACAACAACTCTTACACCAAGAAAGGAAGCATTTTTATCCATTTGGGTGTTTTTCAATCCCACTCCATTTCCTTTTCCTTTCTTTTTCCAGCTTCCAATTCGTAAATTTCTAGCTGTTTCTAGTTCCACTAACATGGGACTCGAAGAAAATAAAGGACACAAGACTGAAATTGAAGATAATGGAGATGAAAAAGCAAGCGAATCCTCCATTTGTGAAACCGAAGACGAAGGAGAAGATGCAGAGAGTCATAAGATCGATTTGGGTCCTCAATACACCCTCAAAGAACAATTCGAGAAAGACAAAGATGATGAGAGTCTCACAAAGTGGAAAGAACAACTACTTGGAAACGTCGACATTAGCGCTGTTGGAGAATCATTAGAACCAGAAGTGAAGATCTTGAGTCTTTCGATCATGTCGCCAGGGAGATCTGACATTGTTCTTCCGATACCCGAAGATGGAAAACCGAAGGGTCCATGGTTTACTTTGAAAGAAGGTTGTCCTTATAGCCTTCGGTTCGCATTTCAAGTTAGCCATAACATTGTTTCAGGTTTAAAGTACACCAACAATGTATGGAAAACTGGCGTCAAGGTGGATGGAATGAAACATATGCTTGGTACTTTTAGTCCCCAACAAGAAGCTTACACTTATGATATGCCAGAGGAGACAACCCCTTCTGGTTTTTTTGCAAGAGGCTCTTACTCTGCTAAAACTAAGTTTGTTGATGATGATGGCAAATGTTACTTGGAGATCAACTATACATTTGACATCAGGAAAGATTGGGCGAACGTTGAAATGCCTAAAACGCCAGAGAATTTTAGCATTTAA 885 39.44 MFLALKNRYLSRIFHFPQQKTTTLTPRKEAFLSIWVFFNPTPFPFPFFFQLPIRKFLAVSSSTNMGLEENKGHKTEIEDNGDEKASESSICETEDEGEDAESHKIDLGPQYTLKEQFEKDKDDESLTKWKEQLLGNVDISAVGESLEPEVKILSLSIMSPGRSDIVLPIPEDGKPKGPWFTLKEGCPYSLRFAFQVSHNIVSGLKYTNNVWKTGVKVDGMKHMLGTFSPQQEAYTYDMPEETTPSGFFARGSYSAKTKFVDDDGKCYLEINYTFDIRKDWANVEMPKTPENFSI 294
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02662 294 FunFam Rho GDP-dissociation inhibitor 1 103 282 - -
Laca7g02662 294 Pfam RHO protein GDP dissociation inhibitor 93 279 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Laca7g02662 294 PANTHER RHO GDP-DISSOCIATION INHIBITOR 83 280 IPR000406 GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(InterPro)|GO:0007266(PANTHER)|GO:0016020(PANTHER)
Laca7g02662 294 Gene3D Coagulation Factor XIII, subunit A, domain 1 101 282 IPR024792 -
Laca7g02662 294 PRINTS RHO protein GDP dissociation inhibitor signature 259 276 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Laca7g02662 294 PRINTS RHO protein GDP dissociation inhibitor signature 217 232 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Laca7g02662 294 PRINTS RHO protein GDP dissociation inhibitor signature 200 216 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Laca7g02662 294 SUPERFAMILY E set domains 86 281 IPR014756 -
Laca7g02662 294 MobiDBLite consensus disorder prediction 70 105 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02662 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
116387 Laca7g02662 Laca9g03389
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:127952240 Laca9g02955 Laca-Chr9:120021879 dispersed
Laca Laca-Chr9:29934097 Laca7g02662 Laca-Chr7:127952240 transposed
Laca Laca-Chr7:127952240 Laca9g03389 Laca-Chr9:138963670 wgd