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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02677 ATGTTTCACATCAATACAGTTCCCCAAAAGACGTCGCTAACCCCTACTGTTAATCACAGTGATCGCGATCTAATGGCGCAGCCTCTTCGTCCTTCCGGCGAGATTCACGTAATCGTCGGGCCTATGTTCGCCGGTAAAACCACCGCTCTTCTTCGCCGGATCAAATCCGAAGGCACTAACGGCAGGAATATAGCGATGATAAAGTCGAGCAAGGATACCCGATACGCCATTAATTCAGTTGTAACACACGACGGGACGAAATACCCATGTTGGGCACTTCCTGATCTGTTGTCTTTCAAACAAAAATTTGGAGAAGAAGCTTATGAAAAGCTGGATGTTATCGGAATTGATGAAGCACAGTTCTTTGATGATCTATATGAATTTTGTTGCACAGCTGCTGATACTGATGGAAAAACTGTCATAGTTGCAGGTCTTGATGGTGATTACTTAAGAAGGAACTTTGGTCCAGTTCTTGATATTGTCCCACTTGCTGACACCATAACCAAATTAACAGCTCGATGTGAAGTATGTGGGAAAAAAGCTCATTTCACTTTCAGGAAGACGAAGGAGACACGAACAGAACTTATAGGTGGGGCAGATATGTATATGCCTGTTTGTCGTCAACATTATGTTAATGGGCAAATGGTGATCAAACACTAA 660 43.18 MFHINTVPQKTSLTPTVNHSDRDLMAQPLRPSGEIHVIVGPMFAGKTTALLRRIKSEGTNGRNIAMIKSSKDTRYAINSVVTHDGTKYPCWALPDLLSFKQKFGEEAYEKLDVIGIDEAQFFDDLYEFCCTAADTDGKTVIVAGLDGDYLRRNFGPVLDIVPLADTITKLTARCEVCGKKAHFTFRKTKETRTELIGGADMYMPVCRQHYVNGQMVIKH 219
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02677 219 Gene3D - 28 170 IPR027417 -
Laca7g02677 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 171 IPR027417 -
Laca7g02677 219 Gene3D - 171 212 - -
Laca7g02677 219 FunFam Thymidine kinase 171 213 - -
Laca7g02677 219 FunFam Thymidine kinase 29 170 - -
Laca7g02677 219 ProSitePatterns Thymidine kinase cellular-type signature. 197 210 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
Laca7g02677 219 Pfam Thymidine kinase 33 210 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Laca7g02677 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 213 - -
Laca7g02677 219 PIRSF Tdk 30 219 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Laca7g02677 219 PANTHER THYMIDINE KINASE 26 218 IPR001267 GO:0004797(InterPro)|GO:0004797(PANTHER)|GO:0005524(InterPro)|GO:0046104(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02677 K00857 thymidine kinase [EC:2.7.1.21]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr1:156466634 Laca7g02677 Laca-Chr7:128639044 dispersed