Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Laca7g02692	ATGGACTTCTCAGAATCTACAAAAATTGTATACGATAGGATCCAAAAAATCGACCCCGAAAACGTCTCCAAGATTGTGGGGTATCTCCTTCTTCAAGATCATGGTGAAAGAGAAATGATAAGATTAGCATATTGCCCCGATAATTTAATACACTCTTTGATCAATAAAGCAAAAACCCACCTCAAATTACCTTCCAATATCCCCGAAATGCCCCTACACTTCACACCATTTACACCTTCAACTCGTCATTCACCATTGACTATCCAAATCCCAAGTCAACCAGTTGACTATGTTCCCATGGTTTATCCCGCTTCATTTCCCGAAGATTATCGTCTTCACAACCACCTTCGTTTCCTTTCATTGGAAGATCAAATTGACTCGGTCAACACCCCAGATTTTTCACCTAACAATTTCTACAAGTCATCAGAACCTTCATTAGGTCCTAGAGCCAATCGGAGGTCGCCAAGTCTACCCGAATTCCCATTCAAAGTTTGCCATTACTTCATTAAAGGATTCTGTAGACATGGAAACAATTGTCGATACTTGCATCCTTCATCCGAAAGTTTCTCCTATATCGAGGACGAAAACGTCTTTTCACCCGGGTCTCTTGAGAAACTAGAGTTAGAACTCACCGAGCTTTTGAAATCAAGAAGAGGGTTTCCTCTCTCCATAGCCTCTTTACCAATGCTTTATTATGAAAAATTCGGTAAGTCATTACAAGCTGAGGGGTATTTGACCGAAAGTCAACGACATGGGAAAGCCGGTTATAGTTTGACTAAACTTCTTGCAAGGCTTAAAAGCATTTGTCTCATTGATAGGCCACATGGGCAACACGCTGTCATTTTGGCTGATGACCTGGCAAAATGTATGGATCATAATGGAGATAGAGATAGGAATGAACATGGTGGTATTGTAGCAGGATCTAGACAAATATACTTGACATTTCCAGCCGAGAGTACCTTTTCGGAGCGTGACGTTTTCAACTATTTCAACAAATTTGGGCCGGTTCATGACGTGAGAATTCCATGTCAGCAAAAGAGAATGTTTGGATTTGTGACTTTTGTATTTGCGGATACGGTTCGCCATATTTTGAACAAGGGAAATCCTCATTTTGTAAGTGGTGCTCGTGTTTTGGTCAAACCCTATCGTGAGAAATCTAAGGCGGATGATAGGAAACATGGAGAGGCATTTCAGCACTCGATATACCAAGGTGGCCACGGTCTTGATAGTGAAATTGGACTGCAGTCAATGCCAAGAATTTGTGATAATTCAAGGCTAATCAAGAAGCAAATCATCGAAGAACAACAAGAACAAGCACTTGAATTTGAGAGAAGGCATTTCTCAGAGATGCAATTATCTGCGGATCTCAATAACCAATTTCCATCTTTTAGAACCACACTCGAAGAGTTGAGGCTACCAGAAGGCAATTCCCATGCACAACAAATGAACTTTCGTTCAACCGAGCGTTTTAATTATCTTTTAGATTATCTCAACAACGGTCCTTCTAATGATGAAAGAATTAGGCAGATAAACACCAAGTACAACGAGGAGAGTAGTCAAGGGCTAAATCTTCCAGACAGCCCGTTTGCAGCTGCATTAGGGGGTGAAATATCGACAGTTATATAG	1626	40.9	MDFSESTKIVYDRIQKIDPENVSKIVGYLLLQDHGEREMIRLAYCPDNLIHSLINKAKTHLKLPSNIPEMPLHFTPFTPSTRHSPLTIQIPSQPVDYVPMVYPASFPEDYRLHNHLRFLSLEDQIDSVNTPDFSPNNFYKSSEPSLGPRANRRSPSLPEFPFKVCHYFIKGFCRHGNNCRYLHPSSESFSYIEDENVFSPGSLEKLELELTELLKSRRGFPLSIASLPMLYYEKFGKSLQAEGYLTESQRHGKAGYSLTKLLARLKSICLIDRPHGQHAVILADDLAKCMDHNGDRDRNEHGGIVAGSRQIYLTFPAESTFSERDVFNYFNKFGPVHDVRIPCQQKRMFGFVTFVFADTVRHILNKGNPHFVSGARVLVKPYREKSKADDRKHGEAFQHSIYQGGHGLDSEIGLQSMPRICDNSRLIKKQIIEEQQEQALEFERRHFSEMQLSADLNNQFPSFRTTLEELRLPEGNSHAQQMNFRSTERFNYLLDYLNNGPSNDERIRQINTKYNEESSQGLNLPDSPFAAALGGEISTVI	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Laca7g02692	541	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	309	384	IPR000504	GO:0003723(InterPro)
	Laca7g02692	541	Gene3D	-	315	390	IPR012677	-
	Laca7g02692	541	SUPERFAMILY	RNA-binding domain, RBD	321	400	IPR035979	GO:0003676(InterPro)
	Laca7g02692	541	Pfam	RNA recognition motif	321	368	IPR000504	GO:0003723(InterPro)
	Laca7g02692	541	SMART	rrm1-1	310	380	IPR000504	GO:0003723(InterPro)
	Laca7g02692	541	ProSiteProfiles	Zinc finger C3H1-type profile.	159	186	IPR000571	GO:0046872(InterPro)
	Laca7g02692	541	SUPERFAMILY	CCCH zinc finger	162	184	IPR036855	GO:0046872(InterPro)
	Laca7g02692	541	Gene3D	-	160	236	-	-
	Laca7g02692	541	FunFam	zinc finger CCCH domain-containing protein 53-like isoform X2	316	387	-	-
	Laca7g02692	541	CDD	RRM-AtC3H46-like	311	380	IPR034365	-
	Laca7g02692	541	PANTHER	RNA-BINDING (RRM-RBD-RNP MOTIFS)	1	531	-	-
	Laca7g02692	541	SMART	c3hfinal6	161	185	IPR000571	GO:0046872(InterPro)
	Laca7g02692	541	ProSiteProfiles	OST-type HTH domain profile.	202	285	IPR025605	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Laca7g02692	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	116390	Laca7g02692	Laca9g03364

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Laca	Laca-Chr2:47774048	Laca7g02692	Laca-Chr7:129079750	transposed
	Laca	Laca-Chr6:22971361	Laca7g02692	Laca-Chr7:129079750	transposed
	Laca	Laca-Chr7:129079750	Laca9g03364	Laca-Chr9:137768760	wgd