AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02694 ATGAATTCAACACTTCTCAGAACATCACCATTCATCCATCGTCGTCCTTTACACTCTTCACGAGTTCCGGAGCCTTTTGCCCCCTTTCGATACAATCTCAATACAAAACCATTATGGAAACAAAAGCTTCAGATTTCACGAACCTCCAATTTCTTTAACACCAAAGTATACCCAAAGAATCCCATAACCAGAGAGACTGTACCCGAAGAATCTACCAAAGATTCGTCAAGAAAAGAGGGTTTTGAGAAGTTTGGGGGTTTATTGAGATGCGGATTTCTTCTCGGTCTGTTGGTTTTGGGGGTAATTCGATGTCAAAGAGCTCTCGCATTGGATCCTGGCAGCGATTTAGGGGTTTTGGCACAGACGGGCGTTGTTCATACACAAGGCTTCTGGAATGGGCCCAAAATTTCACAGATTTTCCGAGTTTTCAGAGAACAAGGTTTGATTTTAGCTGCACTTTTGGGCTTATCTGCCTTCTTCTCCATGGCCGAGACTTCGATCACCACTCTTTCACCTTGGAAGGTGAGAGAGCTAGCTGAAAAAGAAGATGAAAATGGCGTCTTCAAGCTCCTTCGTACCGATATCACACGATTCCTCACCACCATTCTCATTGGCACAACCGTAGTCAACATTGGAGCTACTGCACTTTTCACTGAAGCAGCAACAACAGTTTTTGGTGAAGCCGGTGTTAGTGCAGCAACTGGAGTCATGACTGTTGTTGTATTACTTCTCACTGAAATCACTCCCAAAAGTATAGCTGTTCATAATGCTACTGCTGTTGCTAGGGCTGTGGTTCGCCCAGTTGCATGGCTCTCAATTGTTTTATATCCAGTTGGAAGAGTTGTAACTTTTCTTTCAATGGGAATGCTTAAAATTCTTGGTTTAAAAGGGAAAAGTGAGCCATCTGTGACAGAAGATGAACTGAAGTTGATGTTGAGGGTTGCTGAGTTGAGTGGGGCCATTGAGGAAGAAGAACAAGATATGATTGAGAATGTGTTGGAGATAAAAGATACTCATGTGAAAGAGGTTATGACTCCTCTTGTAGGTGTAGTTGCAGTTGATTCTGGAGCAACATTAGTTGATTTTCATCAATTATGGGTGACTCATCAATACTCTAGGGTGCCTGTATTTGAGCAACGAATTGATAACATTGTGGGTGTGGCTTATGCAATGGATTTGTTGGATCTTGTTCAGAAAGGGGATGTGCTGGAAACTGCTATGGTGGGAGAGATTGCTCATAAGCCTGCTTATTTTGTCCCTGATTCAATGTTGGTTTGGAATCTTCTTAGGGAGTTTCGTATCCGAAAGGTCCACATGGCAGTTGTTCTTAATGAATATGGAGGAACAGTTGGAATTGTAACCCTTGAGGATGTTGTTGAAGAAATTGTTGGTGAAATCTTCGATGAGAATGACTCAAAGGAGGAAATTGATAGAAAAACTGGGAATATTGTGAAGAGAGGGGATGGCGTCTTTGATGTTGATGCAAATACATCAATCGATCAACTTTGTGAAGATTTAGATATTATTTTGCCAGAGGATCATCAATATGAGACAGTTTCAGGGTTTATATGTGAAGCATTTGGATATATACCAAGAACAGGTGAAAGTGTTAAAGTAATTCTTAAAAAAGCAAATGAAGAAGATGATGATGAGAGTAAACAAGAAAATAAGAATCAAGATCAGAAAGAAAAATCCCAAACATTCAAGCTTGAGATATTGGCAGGAAATTGTAGGAAAGTAAATACAGAAGTGGTGATGATGAAACATTTTATCAAGAAACACCCCAAACCACCACCATTAACAACAACCAATGACCATCATCATCATCAAGGTTTTTGA 1839 40.46 MNSTLLRTSPFIHRRPLHSSRVPEPFAPFRYNLNTKPLWKQKLQISRTSNFFNTKVYPKNPITRETVPEESTKDSSRKEGFEKFGGLLRCGFLLGLLVLGVIRCQRALALDPGSDLGVLAQTGVVHTQGFWNGPKISQIFRVFREQGLILAALLGLSAFFSMAETSITTLSPWKVRELAEKEDENGVFKLLRTDITRFLTTILIGTTVVNIGATALFTEAATTVFGEAGVSAATGVMTVVVLLLTEITPKSIAVHNATAVARAVVRPVAWLSIVLYPVGRVVTFLSMGMLKILGLKGKSEPSVTEDELKLMLRVAELSGAIEEEEQDMIENVLEIKDTHVKEVMTPLVGVVAVDSGATLVDFHQLWVTHQYSRVPVFEQRIDNIVGVAYAMDLLDLVQKGDVLETAMVGEIAHKPAYFVPDSMLVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIDRKTGNIVKRGDGVFDVDANTSIDQLCEDLDIILPEDHQYETVSGFICEAFGYIPRTGESVKVILKKANEEDDDESKQENKNQDQKEKSQTFKLEILAGNCRKVNTEVVMMKHFIKKHPKPPPLTTTNDHHHHQGF 612
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02694 612 MobiDBLite consensus disorder prediction 544 564 - -
Laca7g02694 612 PANTHER HEMOLYSIN-RELATED 122 583 - -
Laca7g02694 612 Pfam Transporter associated domain 485 541 IPR005170 -
Laca7g02694 612 Pfam CBS domain 340 397 IPR000644 -
Laca7g02694 612 Pfam CBS domain 408 463 IPR000644 -
Laca7g02694 612 MobiDBLite consensus disorder prediction 591 612 - -
Laca7g02694 612 CDD CBS-pair-CorC-HlyC-assoc 339 460 IPR044751 -
Laca7g02694 612 ProSiteProfiles CBS domain profile. 412 469 IPR000644 -
Laca7g02694 612 FunFam Magnesium-cobalt efflux protein CorC 321 471 - -
Laca7g02694 612 Pfam Cyclin M transmembrane N-terminal domain 148 325 IPR002550 -
Laca7g02694 612 SUPERFAMILY CBS-domain pair 327 466 IPR046342 -
Laca7g02694 612 ProSiteProfiles CNNM transmembrane domain profile. 139 325 IPR002550 -
Laca7g02694 612 Gene3D - 319 474 IPR046342 -
Laca7g02694 612 SMART CorC-HlyC-2 484 589 IPR005170 -
Laca7g02694 612 SUPERFAMILY FAD-binding-transporter-associated domain-like 482 539 IPR036318 GO:0050660(InterPro)
Laca7g02694 612 Gene3D - 479 573 IPR016169 -
Laca7g02694 612 ProSiteProfiles CBS domain profile. 344 405 IPR000644 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02694 K03699 magnesium and cobalt exporter, CNNM family
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr5:225053035 Laca7g02694 Laca-Chr7:129140833 dispersed
Laca Laca-Chr7:129140833 Laca7g03236 Laca-Chr7:151215602 dispersed