Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Laca7g02694 | ATGAATTCAACACTTCTCAGAACATCACCATTCATCCATCGTCGTCCTTTACACTCTTCACGAGTTCCGGAGCCTTTTGCCCCCTTTCGATACAATCTCAATACAAAACCATTATGGAAACAAAAGCTTCAGATTTCACGAACCTCCAATTTCTTTAACACCAAAGTATACCCAAAGAATCCCATAACCAGAGAGACTGTACCCGAAGAATCTACCAAAGATTCGTCAAGAAAAGAGGGTTTTGAGAAGTTTGGGGGTTTATTGAGATGCGGATTTCTTCTCGGTCTGTTGGTTTTGGGGGTAATTCGATGTCAAAGAGCTCTCGCATTGGATCCTGGCAGCGATTTAGGGGTTTTGGCACAGACGGGCGTTGTTCATACACAAGGCTTCTGGAATGGGCCCAAAATTTCACAGATTTTCCGAGTTTTCAGAGAACAAGGTTTGATTTTAGCTGCACTTTTGGGCTTATCTGCCTTCTTCTCCATGGCCGAGACTTCGATCACCACTCTTTCACCTTGGAAGGTGAGAGAGCTAGCTGAAAAAGAAGATGAAAATGGCGTCTTCAAGCTCCTTCGTACCGATATCACACGATTCCTCACCACCATTCTCATTGGCACAACCGTAGTCAACATTGGAGCTACTGCACTTTTCACTGAAGCAGCAACAACAGTTTTTGGTGAAGCCGGTGTTAGTGCAGCAACTGGAGTCATGACTGTTGTTGTATTACTTCTCACTGAAATCACTCCCAAAAGTATAGCTGTTCATAATGCTACTGCTGTTGCTAGGGCTGTGGTTCGCCCAGTTGCATGGCTCTCAATTGTTTTATATCCAGTTGGAAGAGTTGTAACTTTTCTTTCAATGGGAATGCTTAAAATTCTTGGTTTAAAAGGGAAAAGTGAGCCATCTGTGACAGAAGATGAACTGAAGTTGATGTTGAGGGTTGCTGAGTTGAGTGGGGCCATTGAGGAAGAAGAACAAGATATGATTGAGAATGTGTTGGAGATAAAAGATACTCATGTGAAAGAGGTTATGACTCCTCTTGTAGGTGTAGTTGCAGTTGATTCTGGAGCAACATTAGTTGATTTTCATCAATTATGGGTGACTCATCAATACTCTAGGGTGCCTGTATTTGAGCAACGAATTGATAACATTGTGGGTGTGGCTTATGCAATGGATTTGTTGGATCTTGTTCAGAAAGGGGATGTGCTGGAAACTGCTATGGTGGGAGAGATTGCTCATAAGCCTGCTTATTTTGTCCCTGATTCAATGTTGGTTTGGAATCTTCTTAGGGAGTTTCGTATCCGAAAGGTCCACATGGCAGTTGTTCTTAATGAATATGGAGGAACAGTTGGAATTGTAACCCTTGAGGATGTTGTTGAAGAAATTGTTGGTGAAATCTTCGATGAGAATGACTCAAAGGAGGAAATTGATAGAAAAACTGGGAATATTGTGAAGAGAGGGGATGGCGTCTTTGATGTTGATGCAAATACATCAATCGATCAACTTTGTGAAGATTTAGATATTATTTTGCCAGAGGATCATCAATATGAGACAGTTTCAGGGTTTATATGTGAAGCATTTGGATATATACCAAGAACAGGTGAAAGTGTTAAAGTAATTCTTAAAAAAGCAAATGAAGAAGATGATGATGAGAGTAAACAAGAAAATAAGAATCAAGATCAGAAAGAAAAATCCCAAACATTCAAGCTTGAGATATTGGCAGGAAATTGTAGGAAAGTAAATACAGAAGTGGTGATGATGAAACATTTTATCAAGAAACACCCCAAACCACCACCATTAACAACAACCAATGACCATCATCATCATCAAGGTTTTTGA | 1839 | 40.46 | MNSTLLRTSPFIHRRPLHSSRVPEPFAPFRYNLNTKPLWKQKLQISRTSNFFNTKVYPKNPITRETVPEESTKDSSRKEGFEKFGGLLRCGFLLGLLVLGVIRCQRALALDPGSDLGVLAQTGVVHTQGFWNGPKISQIFRVFREQGLILAALLGLSAFFSMAETSITTLSPWKVRELAEKEDENGVFKLLRTDITRFLTTILIGTTVVNIGATALFTEAATTVFGEAGVSAATGVMTVVVLLLTEITPKSIAVHNATAVARAVVRPVAWLSIVLYPVGRVVTFLSMGMLKILGLKGKSEPSVTEDELKLMLRVAELSGAIEEEEQDMIENVLEIKDTHVKEVMTPLVGVVAVDSGATLVDFHQLWVTHQYSRVPVFEQRIDNIVGVAYAMDLLDLVQKGDVLETAMVGEIAHKPAYFVPDSMLVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIDRKTGNIVKRGDGVFDVDANTSIDQLCEDLDIILPEDHQYETVSGFICEAFGYIPRTGESVKVILKKANEEDDDESKQENKNQDQKEKSQTFKLEILAGNCRKVNTEVVMMKHFIKKHPKPPPLTTTNDHHHHQGF | 612 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Laca7g02694 | 612 | MobiDBLite | consensus disorder prediction | 544 | 564 | - | - | |
| Laca7g02694 | 612 | PANTHER | HEMOLYSIN-RELATED | 122 | 583 | - | - | |
| Laca7g02694 | 612 | Pfam | Transporter associated domain | 485 | 541 | IPR005170 | - | |
| Laca7g02694 | 612 | Pfam | CBS domain | 340 | 397 | IPR000644 | - | |
| Laca7g02694 | 612 | Pfam | CBS domain | 408 | 463 | IPR000644 | - | |
| Laca7g02694 | 612 | MobiDBLite | consensus disorder prediction | 591 | 612 | - | - | |
| Laca7g02694 | 612 | CDD | CBS-pair-CorC-HlyC-assoc | 339 | 460 | IPR044751 | - | |
| Laca7g02694 | 612 | ProSiteProfiles | CBS domain profile. | 412 | 469 | IPR000644 | - | |
| Laca7g02694 | 612 | FunFam | Magnesium-cobalt efflux protein CorC | 321 | 471 | - | - | |
| Laca7g02694 | 612 | Pfam | Cyclin M transmembrane N-terminal domain | 148 | 325 | IPR002550 | - | |
| Laca7g02694 | 612 | SUPERFAMILY | CBS-domain pair | 327 | 466 | IPR046342 | - | |
| Laca7g02694 | 612 | ProSiteProfiles | CNNM transmembrane domain profile. | 139 | 325 | IPR002550 | - | |
| Laca7g02694 | 612 | Gene3D | - | 319 | 474 | IPR046342 | - | |
| Laca7g02694 | 612 | SMART | CorC-HlyC-2 | 484 | 589 | IPR005170 | - | |
| Laca7g02694 | 612 | SUPERFAMILY | FAD-binding-transporter-associated domain-like | 482 | 539 | IPR036318 | GO:0050660(InterPro) | |
| Laca7g02694 | 612 | Gene3D | - | 479 | 573 | IPR016169 | - | |
| Laca7g02694 | 612 | ProSiteProfiles | CBS domain profile. | 344 | 405 | IPR000644 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Laca7g02694 | K03699 | magnesium and cobalt exporter, CNNM family |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Laca | Laca-Chr5:225053035 | Laca7g02694 | Laca-Chr7:129140833 | dispersed | |
| Laca | Laca-Chr7:129140833 | Laca7g03236 | Laca-Chr7:151215602 | dispersed |