AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02698 ATGCGTTTGCCTCCTTCTGCTACTTCTGCACCATTTCTTCAATCTTTTCTCATGGATTCATCTTTCCAAATCCAGAATTCGTCTTTCCAAATCGAACCCAGAAAGAAAAGGTCAAAACTTTTAGATGAAGATGATGACAGAATCCATGGCGAGGGTTTCGGATTGGAGAATTTACCCAGGGATGTACTCCTCGACATACTCGCCAAGCTGCCGATTTCATCCCTGATTCAGTTCCGGTTTGTTTGCCGTTCATGGAAACTGCTGTCAGTCGACCCTGAACTTTCCCGGCTTCACCACGCTGCGGTGGCGGAAAACGACCCGACGCTGCTGTTCCACTGCGATTACCCTATCCGTAACCAACTCTCTTTCGTCGAGTTATCCTCCGGTGGCGGCGGCGACGAAGATGAAGATGATGAAGACGACGACGACAAAATCGTAAGAAAGATTTCCACACCTTTTTGTAGCTCCATGCCTGAATTCAACGTCGTGGGTTCATGTAATGGCTTGTTGTGCTTGTCCGATTCGCTTTATGGTGAACCCGTTTACGTTTTCAACCCGTTTTCCCGGGATTATCTGGAGCTACCGAAATCCAAGCAGTTTCAGGAACAGGAGGTGATGTTCGGATTCGGATTTCACCCAATTACAAACGAGTACAAGGTTGTGAAGATTGTGTACTACAGAAACCGGCAGGGGAATCGTCGGGTCAGCCGAAACAACAGGAATTACCCGAAATCGGAGGTTCAAATTCTCACAATTTCCAAAGAAACAAACAAGAATACATGGAGATCGCTCGGGAAAGTGCCTTACCAGCTTGACAGACAAGCGGCGGAAGTTCCTGTAGTGAACGGGAGAATCCATTGGCTGAGCCGACCTGGTAGAGTCGCCGGAGTTTTAGGTCGAGCGATCATCTCTTTTGACCTAAAAGACGAACAGTTCAAAGTAGTGACGAAACCTAACCATGTTACAGTCATCCGGAGCAACTTTCACTTGGCCGTCATACGAGGGTGTCTAGCGGCGGTGATTTCATGTGGGTATGGGAAATTGGAGATCTGGGTCATGAAGGAATACGATTCCCAGGAATCTTGGATGAAGGAATTCGTCATCCATGGAGTTTATCCTGCAAGGGTCCCGAATCATGAGAACCATTACCAGATAGGGAGACCTGGTTTATCACGGAGGATGGTTAGGGTTTTATGCGTTTTGAAGAACGGAGAGATCTTACTGGAATACAGAGGAGGAAGCTTGGTGAAATACGATCCTAAATGGAAAGAGTTTAAAGACGTCGTCTTCTCCAAAATGCCCAAATTGTTTCAGACAATTGTTCATCTGGGTACCCTCAATTGGATCCATACCTCAATGTAA 1362 46.7 MRLPPSATSAPFLQSFLMDSSFQIQNSSFQIEPRKKRSKLLDEDDDRIHGEGFGLENLPRDVLLDILAKLPISSLIQFRFVCRSWKLLSVDPELSRLHHAAVAENDPTLLFHCDYPIRNQLSFVELSSGGGGDEDEDDEDDDDKIVRKISTPFCSSMPEFNVVGSCNGLLCLSDSLYGEPVYVFNPFSRDYLELPKSKQFQEQEVMFGFGFHPITNEYKVVKIVYYRNRQGNRRVSRNNRNYPKSEVQILTISKETNKNTWRSLGKVPYQLDRQAAEVPVVNGRIHWLSRPGRVAGVLGRAIISFDLKDEQFKVVTKPNHVTVIRSNFHLAVIRGCLAAVISCGYGKLEIWVMKEYDSQESWMKEFVIHGVYPARVPNHENHYQIGRPGLSRRMVRVLCVLKNGEILLEYRGGSLVKYDPKWKEFKDVVFSKMPKLFQTIVHLGTLNWIHTSM 453
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02698 453 ProSiteProfiles F-box domain profile. 52 97 IPR001810 GO:0005515(InterPro)
Laca7g02698 453 SMART fbox-2 58 98 IPR001810 GO:0005515(InterPro)
Laca7g02698 453 PANTHER OS02G0783600 PROTEIN 58 368 IPR052361 -
Laca7g02698 453 Gene3D - 49 97 - -
Laca7g02698 453 Pfam F-box domain 55 94 IPR001810 GO:0005515(InterPro)
Laca7g02698 453 NCBIfam F-box protein interaction domain 164 370 IPR017451 -
Laca7g02698 453 SUPERFAMILY F-box domain 51 113 IPR036047 GO:0005515(InterPro)
Laca7g02698 453 Pfam F-box associated 281 367 IPR006527 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02698 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
115859 Laca5g03034 Laca7g02698
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:129207479 Laca8g04057 Laca-Chr8:183304064 dispersed
Laca Laca-Chr5:189521045 Laca7g02698 Laca-Chr7:129207479 wgd