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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02713 ATGAATCGATTCACTTTCAGAAAAATATACACACGTAGTAATCCTATTATCATTGGTGCTCGAAGGAAGATCTCAGAATCATCAATACATACAGCAAACAGCAACTCTATCTTTAGAAAACTTATTTCAGTCTTAAGGGATAAATCCATAAGTACATTCCAAACTAGATCTGCAACAAGCATGGTGGTAAACTTTGAAGATTCGTCAAAGGTTCAAAACAATGAAGTTGACCACATTCATATGCTAAATGCGACTTATGATAATTATGATGGAGTCATTGTGGACATTAAGGAGAATATGGATGAAGATATCTTTACCACTCTACTTCAAACATCAATATCCCAATGGAGGCAACAGGGTAAAAAGGGTGTTTGGCTTAAACTGTCTCTTGAACTTGTGAGTCTTGTTAAACCTGCAGTGAAGGAAGGATTTTGGTATCATCATGCTGAACCAACATACTTGATGCTCGTGTATTGGATTCCTGAAACTAATCATACTCTTCCATCTAATGCTTCTCATCGTGTTGGTGTTGCTGCTTTTGTGGTCAACTCTAAAGGGGAGATTCTTGTAGTGCAAGAGAAAAGCGGGGTGTTTAAAGGCACAGGGGTATGGAAATTACCAACTGGTAGTGTTGAGGAGGGTGAAGATATATGTACAGCTGCAAGCAGGGAAGTGAAAGAAGAAGCTGGAATTGATACAGAATTTGTGGAAGTTCTAGCATTCAGGCAAAGCCACATGTCATTTTTTAGCAAATCGGATCTAATGTTTGTGTGTATGCTAAAACCAACATCATTTGAGATCGAAAAGCAAGAGTCAGAGATTGAAGCAGCTAAGTGGATGCCTATTGAGGAATACGCGAATCAGCCATTTGTAAAGAATCGAAAATCATTTGAGTATGTTGCTAAGATATGCATAGAACGGAAAGATAACAAATATGTCGGCTTCAATGCAATTTCTACAGCAACTGCTACATCTCTCAAAAACAGCTATTTGTATTCGCATCATCAGGAGGAGTAG 1017 38.15 MNRFTFRKIYTRSNPIIIGARRKISESSIHTANSNSIFRKLISVLRDKSISTFQTRSATSMVVNFEDSSKVQNNEVDHIHMLNATYDNYDGVIVDIKENMDEDIFTTLLQTSISQWRQQGKKGVWLKLSLELVSLVKPAVKEGFWYHHAEPTYLMLVYWIPETNHTLPSNASHRVGVAAFVVNSKGEILVVQEKSGVFKGTGVWKLPTGSVEEGEDICTAASREVKEEAGIDTEFVEVLAFRQSHMSFFSKSDLMFVCMLKPTSFEIEKQESEIEAAKWMPIEEYANQPFVKNRKSFEYVAKICIERKDNKYVGFNAISTATATSLKNSYLYSHHQEE 338
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02713 338 CDD Nudix-Hydrolase-12 173 304 - -
Laca7g02713 338 FunFam Nudix hydrolase 8 174 312 - -
Laca7g02713 338 ProSiteProfiles Nudix hydrolase domain profile. 172 304 IPR000086 -
Laca7g02713 338 PANTHER NUDIX HYDROLASE RELATED 53 336 IPR003293 GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER)
Laca7g02713 338 Pfam NUDIX domain 173 295 IPR000086 -
Laca7g02713 338 ProSitePatterns Nudix box signature. 209 230 IPR020084 GO:0016787(InterPro)
Laca7g02713 338 SUPERFAMILY Nudix 140 302 IPR015797 -
Laca7g02713 338 Gene3D - 79 164 - -
Laca7g02713 338 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 132 150 IPR003293 -
Laca7g02713 338 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 258 282 IPR003293 -
Laca7g02713 338 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 170 188 IPR003293 -
Laca7g02713 338 Pfam Nudix hydrolase domain 82 160 IPR040618 -
Laca7g02713 338 FunFam nudix hydrolase 2 79 165 - -
Laca7g02713 338 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 174 312 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02713 K26956 ADP-ribose/NAD+ diphosphatase [EC:3.6.1.13 3.6.1.22]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr5:2409877 Laca7g02713 Laca-Chr7:129660725 dispersed
Laca Laca-Chr7:9527557 Laca7g02713 Laca-Chr7:129660725 dispersed
Laca Laca-Chr7:129652256 Laca7g02713 Laca-Chr7:129660725 tandem