AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02715 ATGGCGGCAATACTGGCTTCTAATAGCTGCTATTGCCGTGATGTGCAATTGGTAAATCAAGGAAGAACAGCTGAAAATCTCAGCTTCTCAAGAGCTCTTTCTATCCGGAAATTGGATCGCCATGACTGTGCTTCACATAAAACTGAAAGGTTTCGCAAATTCCATGTTAAGATGCAGCAGACAGAATCGCCCATGAAATTTGGTACCAACGGTCGACCTGTAAAGTTGGTTACAAATGGTCAAACTGTGAAGTTGGGTGCCAATGGTAAACCAGTAAATTTGGACACCAATGGTAAGCCTGTAAAGTTGGGTTCCAATGGTAAACCAGTCACCATGGTTTCCACCAGTGAACTTGTAAACAACAAGACTCCATCCAAACAAACATCAGGATTAGTGAATGGATCACGATCAGCACCAATTGTTAATGGAACAAGTCTTGTTAAGAGAGAGACCACTCCAGCACTAGTTAAGTCAGTAAAAGTTAAAGAACCCACAGGATTTCCACCCTCTGAAGAATTAAAGGTGTTGCCATCAGATGAAAGTTTCAGCTGGGCAAATGAAAATTATAATTCGGTGCAAAGATCAATAGATGTTTGGTCTTTTGTTCTTTCTTTGCGTGTTCGTGTTCTATTGGACAATGCAAAATGGGCATATCCTGGAGGCTTCACAGAAGAAAAACAGAAAAACAGAAGAAGAAAAACAGCTTCATGGTTAAGAGAGAGTGTGCTTCAACTTGGCCCAACTTTTATAAAACTCGGGCAGTTATCTTCAACAAGATCAGATCTATTTCCACGTGAATTTGTCGATGAGCTTGCTAAATTACAGGACAGAGTACCAGCTTTCTCACCAGCAAAAGCGAAAGGTTTTATTGAAAAAGAATTGGGAGCTCCTGTTCATATAATCTTTAAGGAGTTTGAAGAAAGACCAATTGCAGCTGCTAGTCTTGGTCAGGTACATCGTGCAATATTACATAATGGAGAGAAAGTGGTTGTTAAAGTTCAAAGACCTGGTTTGAAGAAACTTTTTGACATAGATTTAAAGAATTTAAAGCTGGTGGCTGAGTATTTTCAAAGGAGTGAAAGTCTTGGTGGTCCAACAAGAGACTGGATAGGCATCTATGATGAATGTGCCAAGATCTTGTATGAGGAGATTGATTATATAAACGAAGGGAAAAATGCTGATAAATTTCGTAGGGATTTTCGTAATGTTAAGTGGGTCCGAGTGCCTCAAGTATTCTGGGATTATACTGCAACAAAGGTGCTAACTTTGGAGTATGTACCAGGAATTAAGATTAATAATTTGGATTTGATAAAAGAAAGGGGTTACAGTCGATCTCAAATCTCTTCACATGCCATTGAAGCATACTTGATTCAGATACTGAAAACTGGTTTCTTTCATGCTGATCCTCACCCTGGAAATCTTGCAATTGACTCAGATGAATCACTAATCTACTATGATTTTGGCATGATGGGGGAGATTAAATCCTTCACTAGAGAAAGATTGATGGATCTTTTTTATGCAGTTTATGAAAAAGATGCAAAAAAGGTTATGAACAGTTTGATAAGTCTTGAAGCACTTCAACCTACTGGAGACATGTCATCAGTGAGAAGATCTGTTCAGTTCTTTTTGGATAATTCTTTAAACCAGTCACCAGATCAGCAAACAACTTTGGCTGCAATAGGCGAGGAGTTATTTTCCATTGCCACAGATCAACCTTTCCGGTTCCCATCAAACTTCACATTTGTGATTAGGGCTTTTTCCACTCTTGAAGGAATCGGCTACTCACTGGATCCAGATTTTTCATTTGTCAAGATTGCTGCACCTTATGCACAGGAGCTATTAGATCTCAAACAACAGCGTAGTGGGACACAACTTGTACAAGAGATACGAAAACAAGCGGATGATGCAAGATCATACACCATGTCAATGCCTTATAGAGTTCAACGAATCGAAGAGTTTGTAAAACAACTAGAATCAGGAGACCTTAAACTTCGTGTCAGAGTTCTCGAGTCTGAGAGAGCAGCTAGGAAGGCAACAATATTGCAAATGGGAACCCTGTATACGGTTCTCGGGGGTACACTTGTAAATATTGGTCTCACAATGACCACTCAAGGCAACCAACTTATAGCAAATGGGTCATTTATTGCTGCTGGTGTTTTTCTAGCATTACTTATTAGGTCAATGCAAAGGGTGAAGAAGCTTGATAAATTTGAAAAGATGATTTAA 2226 39.31 MAAILASNSCYCRDVQLVNQGRTAENLSFSRALSIRKLDRHDCASHKTERFRKFHVKMQQTESPMKFGTNGRPVKLVTNGQTVKLGANGKPVNLDTNGKPVKLGSNGKPVTMVSTSELVNNKTPSKQTSGLVNGSRSAPIVNGTSLVKRETTPALVKSVKVKEPTGFPPSEELKVLPSDESFSWANENYNSVQRSIDVWSFVLSLRVRVLLDNAKWAYPGGFTEEKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPAKAKGFIEKELGAPVHIIFKEFEERPIAAASLGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLKNLKLVAEYFQRSESLGGPTRDWIGIYDECAKILYEEIDYINEGKNADKFRRDFRNVKWVRVPQVFWDYTATKVLTLEYVPGIKINNLDLIKERGYSRSQISSHAIEAYLIQILKTGFFHADPHPGNLAIDSDESLIYYDFGMMGEIKSFTRERLMDLFYAVYEKDAKKVMNSLISLEALQPTGDMSSVRRSVQFFLDNSLNQSPDQQTTLAAIGEELFSIATDQPFRFPSNFTFVIRAFSTLEGIGYSLDPDFSFVKIAAPYAQELLDLKQQRSGTQLVQEIRKQADDARSYTMSMPYRVQRIEEFVKQLESGDLKLRVRVLESERAARKATILQMGTLYTVLGGTLVNIGLTMTTQGNQLIANGSFIAAGVFLALLIRSMQRVKKLDKFEKMI 741
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02715 741 CDD ABC1-ADCK3-like 273 520 - -
Laca7g02715 741 SUPERFAMILY Protein kinase-like (PK-like) 275 523 IPR011009 -
Laca7g02715 741 MobiDBLite consensus disorder prediction 87 109 - -
Laca7g02715 741 Pfam ABC1 atypical kinase-like domain 273 519 IPR004147 -
Laca7g02715 741 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 107 674 IPR050154 GO:0046467(PANTHER)|GO:0055072(PANTHER)|GO:1901031(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02715 K03688 ubiquinone biosynthesis protein
Laca7g02715 K08869 aarF domain-containing kinase
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr2:102814212 Laca7g02715 Laca-Chr7:129737793 dispersed
Laca Laca-Chr7:129737793 Laca8g00771 Laca-Chr8:22567327 dispersed
Laca Laca-Chr7:129737793 Laca1g00858 Laca-Chr1:22557776 transposed
Laca Laca-Chr7:129737793 Laca4g02219 Laca-Chr4:91850684 transposed