AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Laca7g02729 | ATGGGGTACCAATGTGATCATTGTGGGGAAGCAAGATCAATGGTGTATTGTAGATCAGATGCAGCCTACTTATGTTTATCATGTGATCGTGTTGTTCATTCTGCAAATGCTCTATCAAAACGCCATTCAAGAACACTTGTATGTGATAGGTGTAATTCACAACCTGCAGTGGTTAGATGTGTAGAAGAAAAAGTCTCACTTTGTCAAAATTGTGATTGGGTTGGTCATAACGGGTCAACCACACACAGTAGACAAACATTGAATTGCTACTCGGGTTGCCCTTCGGCTGTTGAACTTTCATCTATTTGGTCGTTTATGACGGAATTGCCCTCGGTTATTGATTCCACTTGTGAACAAGGAATTGGGTCAATGAGCATTGCTGATAATAGTCAAGGACCTTCTAGAAGCAACAATAATCAAGATGCAGTTGTAAATGAATCGAATTTATGGACAGGTTCTTCAAGTGTTTGTGTTGATGATAAACAGGAAAATGTAGTTCAACAAGTTGGACAGTTGAATTCTTCTTCATCAAAGATATCACATTCAGGGAAAAAAGATGCTGAAGCATGTGATGATGAAGGATTCTATGTTGACTTTAATATGGATGAAGTTGACTTGAGCATTGAGAACTATGAAGAACTCTTTGGTGTAGGCCATAATGATCCTGAACATCTTTTTGCAAAAGATGGGATTGATTGTTTGTTTGGTGGTGCTGAATCAAATTTTCATGGTTCATATGCTGCCAAGGAATCATCAACTGGACATGGGAATCAAGTGCAACCAGCATGCAGCAATGCAGCATCAGCCGATTCATTAATGAGCTGCAAAACAGAGCCAAATCCTTGTTATGGAAGACAACATTCAAACATCTCATTCTCAAGTCTCACAGGAGAGAGTAGTGCTGGTGAATATCAAGATTGTGGAGCTTCTTCTTCAATGATTCTAATGGGTGAGCCACCATGGTTCATCCAGGGTGGTGGTGGTGGCTCTGATCAAACCACCGCCGCTATTGGTAGCAGAAGTGATGCTGTCCTCCGTTACAGGGAAAAAAAGAAGATGAGAAAATTTGAGAAGAGAGTAAGATATGCAACACGAAAGGCACGGGCAGATGTAAGAAAGCGTGTGAAAGGGCGATTCGTGAAGGCTGGTGATGCGTATGATTATGATCCCATGAGTCAAACTCGAAGCTACTAA | 1194 | 40.95 | MGYQCDHCGEARSMVYCRSDAAYLCLSCDRVVHSANALSKRHSRTLVCDRCNSQPAVVRCVEEKVSLCQNCDWVGHNGSTTHSRQTLNCYSGCPSAVELSSIWSFMTELPSVIDSTCEQGIGSMSIADNSQGPSRSNNNQDAVVNESNLWTGSSSVCVDDKQENVVQQVGQLNSSSSKISHSGKKDAEACDDEGFYVDFNMDEVDLSIENYEELFGVGHNDPEHLFAKDGIDCLFGGAESNFHGSYAAKESSTGHGNQVQPACSNAASADSLMSCKTEPNPCYGRQHSNISFSSLTGESSAGEYQDCGASSSMILMGEPPWFIQGGGGGSDQTTAAIGSRSDAVLRYREKKKMRKFEKRVRYATRKARADVRKRVKGRFVKAGDAYDYDPMSQTRSY | 397 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Laca7g02729 | 397 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 10 | 4 | 386 | - | - | |
| Laca7g02729 | 397 | Pfam | ANCHR-like B-box zinc-binding domain | 47 | 79 | - | - | |
| Laca7g02729 | 397 | CDD | Bbox1-BBX-like | 47 | 87 | IPR049808 | - | |
| Laca7g02729 | 397 | ProSiteProfiles | Zinc finger B-box type profile. | 5 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Laca7g02729 | 397 | Pfam | CCT motif | 340 | 382 | IPR010402 | GO:0005515(InterPro) | |
| Laca7g02729 | 397 | ProSiteProfiles | CCT domain profile. | 340 | 382 | IPR010402 | GO:0005515(InterPro) | |
| Laca7g02729 | 397 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Laca7g02729 | 397 | SMART | bboxneu5 | 48 | 87 | IPR000315 | GO:0008270(InterPro) | |
| Laca7g02729 | 397 | CDD | Bbox1-BBX-like | 5 | 47 | IPR049808 | - | |
| Laca7g02729 | 397 | ProSiteProfiles | Zinc finger B-box type profile. | 43 | 87 | IPR000315 | GO:0008270(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Laca7g02729 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 115867 | Laca5g03062 | Laca7g02729 | |
| 116397 | Laca7g02729 | Laca9g03323 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Laca | Laca-Chr4:77291616 | Laca7g02729 | Laca-Chr7:129973389 | dispersed | |
| Laca | Laca-Chr6:100817937 | Laca7g02729 | Laca-Chr7:129973389 | dispersed | |
| Laca | Laca-Chr7:129973389 | Laca8g04166 | Laca-Chr8:197705710 | dispersed | |
| Laca | Laca-Chr8:41611161 | Laca7g02729 | Laca-Chr7:129973389 | transposed | |
| Laca | Laca-Chr5:190409855 | Laca7g02729 | Laca-Chr7:129973389 | wgd | |
| Laca | Laca-Chr7:129973389 | Laca9g03323 | Laca-Chr9:136295091 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lacanog00571 | . | 11 | 328 | C2C2-CO-like Transcription Factor family | AT2G47890 | 45.902 | 2.92e-95 | 286.0 | |
| Lacanog03108 | . | 4 | 92 | C2C2-CO-like Transcription Factor family | AT5G54470 | 59.551 | 1.06e-30 | 113.0 | |
| Lacanog05220 | . | 210 | 278 | C2C2-CO-like Transcription Factor family | AT2G24790 | 42.029 | 6.03e-11 | 61.2 | |
| Laca1g01202 | . | 3 | 221 | C2C2-CO-like Transcription Factor family | AT3G21150 | 30.833 | 2.30e-19 | 81.3 | |
| Laca1g02290 | ACH | 307 | 388 | C2C2-CO-like Transcription Factor family | AT5G24930 | 42.683 | 1.24e-12 | 67.0 | |
| Laca2g00959 | ACH | 315 | 386 | C2C2-CO-like Transcription Factor family | AT5G24930 | 42.466 | 4.84e-11 | 62.0 | |
| Laca2g02229 | ACH | 9 | 347 | C2C2-CO-like Transcription Factor family | AT3G02380 | 52.255 | 5.88e-122 | 354.0 | |
| Laca2g03662 | ACH | 284 | 331 | C2C2-CO-like Transcription Factor family | AT5G57660 | 54.167 | 4.78e-10 | 58.5 | |
| Laca3g01318 | ACH | 3 | 114 | C2C2-CO-like Transcription Factor family | AT4G27310 | 52.174 | 4.62e-33 | 117.0 | |
| Laca3g02767 | . | 289 | 400 | C2C2-CO-like Transcription Factor family | AT1G68520 | 40.0 | 1.64e-18 | 83.6 | |
| Laca3g02885 | . | 17 | 391 | C2C2-CO-like Transcription Factor family | AT2G33500 | 40.876 | 7.48e-74 | 237.0 | |
| Laca4g01892 | ACH | 3 | 106 | C2C2-CO-like Transcription Factor family | AT4G27310 | 50.476 | 4.28e-31 | 112.0 | |
| Laca4g04733 | ACH | 58 | 347 | C2C2-CO-like Transcription Factor family | AT3G02380 | 38.339 | 2.05e-55 | 181.0 | |
| Laca5g00605 | . | 272 | 320 | C2C2-CO-like Transcription Factor family | AT3G02380 | 56.0 | 4.06e-13 | 65.9 | |
| Laca5g00644 | . | 1 | 331 | C2C2-CO-like Transcription Factor family | AT1G75540 | 40.87 | 6.71e-74 | 229.0 | |
| Laca5g01239 | . | 45 | 406 | C2C2-CO-like Transcription Factor family | AT5G24930 | 50.0 | 9.53e-96 | 289.0 | |
| Laca5g01912 | ACH | 288 | 399 | C2C2-CO-like Transcription Factor family | AT1G68520 | 46.903 | 1.24e-21 | 94.0 | |
| Laca5g01989 | ACH | 1 | 355 | C2C2-CO-like Transcription Factor family | AT5G57660 | 44.389 | 6.35e-96 | 289.0 | |
| Laca5g02932 | ACH | 1 | 299 | C2C2-CO-like Transcription Factor family | AT1G78600 | 52.273 | 2.49e-88 | 263.0 | |
| Laca5g02959 | . | 1 | 224 | C2C2-CO-like Transcription Factor family | AT1G75540 | 49.78 | 8.43e-65 | 204.0 | |
| Laca5g03062 | ACH | 1 | 373 | C2C2-CO-like Transcription Factor family | AT5G48250 | 52.273 | 4.04e-130 | 376.0 | |
| Laca6g02140 | . | 176 | 278 | C2C2-CO-like Transcription Factor family | AT3G07650 | 41.525 | 3.29e-15 | 71.6 | |
| Laca6g02317 | ACH | 225 | 276 | C2C2-CO-like Transcription Factor family | AT2G24790 | 51.923 | 1.85e-11 | 62.0 | |
| Laca7g02729 | ACH | 1 | 372 | C2C2-CO-like Transcription Factor family | AT3G07650 | 55.422 | 1.87e-140 | 403.0 | |
| Laca7g02816 | ACH | 1 | 277 | C2C2-CO-like Transcription Factor family | AT1G78600 | 45.614 | 5.08e-68 | 211.0 | |
| Laca8g00164 | ACH | 284 | 331 | C2C2-CO-like Transcription Factor family | AT5G57660 | 56.25 | 9.87e-11 | 59.7 | |
| Laca8g01266 | . | 10 | 273 | C2C2-CO-like Transcription Factor family | AT1G68190 | 39.13 | 5.30e-63 | 204.0 | |
| Laca8g02571 | ACH | 2 | 355 | C2C2-CO-like Transcription Factor family | AT5G57660 | 42.278 | 2.79e-83 | 256.0 | |
| Laca8g03754 | . | 1 | 163 | C2C2-CO-like Transcription Factor family | AT4G38960 | 65.318 | 1.46e-77 | 227.0 | |
| Laca8g03806 | ACH | 4 | 168 | C2C2-CO-like Transcription Factor family | AT5G54470 | 42.105 | 7.35e-27 | 101.0 | |
| Laca8g04166 | . | 1 | 399 | C2C2-CO-like Transcription Factor family | AT2G33500 | 39.524 | 8.10e-82 | 253.0 | |
| Laca9g00690 | . | 185 | 270 | C2C2-CO-like Transcription Factor family | AT2G24790 | 40.698 | 3.70e-11 | 60.1 | |
| Laca9g01991 | ACH | 285 | 331 | C2C2-CO-like Transcription Factor family | AT5G57660 | 55.319 | 2.73e-10 | 57.4 | |
| Laca9g02619 | . | 1 | 87 | C2C2-CO-like Transcription Factor family | AT5G54470 | 59.77 | 3.44e-30 | 113.0 | |
| Laca9g03246 | ACH | 1 | 103 | C2C2-CO-like Transcription Factor family | AT1G78600 | 85.437 | 7.21e-62 | 195.0 | |
| Laca9g03323 | ACH | 1 | 373 | C2C2-CO-like Transcription Factor family | AT5G48250 | 53.47 | 2.40e-126 | 366.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Laca | CCT | 4.8e-15 | CL0281 | TF | C2C2-CO-like |