AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Laca7g02760 | ATGTTTCGCGTTTTGAAGAACTTCCCTCTCAAAGGCGTCACCAACTGCCGATGGATGACCACCACCACCACCGTAATGAGTTTCGGAGACGGTAGCCATGGTGCTCTTGGCTTACCAATCTCCGTCACCGGAATCAATTCTGACGCCTACGAACCCACTCCAATCTCAGCCCTACCTCCCGATGTTTCCAGCATCGCCGCCGGTCACTACCACTCTCTCGCCGTTACTTCCCAAGGCCACCTCTGGTCTTGGGGTCGCAATGCCGAATCACAACTCGGTCGGAACCTTGATTCCCCTAGAGAAACATGGATTGAACCAAAAAGAATAGAGGGATTAAGTGATGTAAAATCTGCATTTGCCTCTGGTGTTGTTTCTGCAGCTATTGGAATCGACGGGTGTATATGGATTTGGGGAAAATCAAAACGGGGTCAATTAGGTCTTGGAATCGGAATCACAGAAGCCATTCATCCCACCAAAATAAAATCTCTTTCAAAAGAAGAGATAATTAAGGTCTCATTTGGATGGGGACACGCTCTTGCACTTACTAAAGATGGAAAGTTATTCGGTTGGGGTTATTCAGCTGATGGTAGATTAGGAAAGAGAGAAATTACAGGTGTGTCCCCACTCGATTCTGTAAACAATTTGTCAAAGCGTGAAGATGCTGAAAAAGTAGTATTGGAAGCTATGAGTAAAGAGAATGATATGCCTATCATATGGGAGCCATGTTTGATTGACGAATTAAAAGGTGTTGAAGTTGCTGATGTGTCATGTGGACTTGACCACACCTTGGTTCTTTTACGTGATGGAACTTTATTAAGTGGAGGAAGCAATGTATATGGGCAATTGGGAAGATCAACACAAGATTTGGAGTTACAGTTACTTCCTGTTGATATAAGTGTCCACCCTGTTTCAATTTCTTCAGGGCTAGGGCATTCTTTAGCTATATGCCAGATTCCATCTGCAGAAGGTGGTGAAGGTATCTCAGGGGTGTTTTCATGGGGTTGGGGGCAAAATTGTCAACTTGGAAGAGAAGGTCCAGGGAATATTCCGTTGCTTGTGGATGGGCTTTTAGGGGAAAAGCCCGTATCAGTGTCGGGTGGGCGGGTCCACTCCATTGTCCTCACGGACAATGGAGAGGTTTTTTCTTGGGGGTGTGGGAGAAGTGGGAGGCTTGGGTTGGGTAGCTCCATGGATGAACATGAACCAATGGTGGTTGAGTTTTCAGAAGATACAAATGTTTTGCAAGTTGTTTCAGGGTTTGATCATAATTTGGTTTTAACTAGTTGA | 1287 | 45.22 | MFRVLKNFPLKGVTNCRWMTTTTTVMSFGDGSHGALGLPISVTGINSDAYEPTPISALPPDVSSIAAGHYHSLAVTSQGHLWSWGRNAESQLGRNLDSPRETWIEPKRIEGLSDVKSAFASGVVSAAIGIDGCIWIWGKSKRGQLGLGIGITEAIHPTKIKSLSKEEIIKVSFGWGHALALTKDGKLFGWGYSADGRLGKREITGVSPLDSVNNLSKREDAEKVVLEAMSKENDMPIIWEPCLIDELKGVEVADVSCGLDHTLVLLRDGTLLSGGSNVYGQLGRSTQDLELQLLPVDISVHPVSISSGLGHSLAICQIPSAEGGEGISGVFSWGWGQNCQLGREGPGNIPLLVDGLLGEKPVSVSGGRVHSIVLTDNGEVFSWGCGRSGRLGLGSSMDEHEPMVVEFSEDTNVLQVVSGFDHNLVLTS | 428 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Laca7g02760 | 428 | Gene3D | - | 231 | 428 | IPR009091 | - | |
| Laca7g02760 | 428 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 23 | 78 | IPR000408 | - | |
| Laca7g02760 | 428 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 62 | 91 | - | - | |
| Laca7g02760 | 428 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 252 | 281 | - | - | |
| Laca7g02760 | 428 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 378 | 428 | IPR000408 | - | |
| Laca7g02760 | 428 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 79 | 131 | IPR000408 | - | |
| Laca7g02760 | 428 | SUPERFAMILY | RCC1-BLIP-II | 330 | 427 | IPR009091 | - | |
| Laca7g02760 | 428 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 269 | 318 | IPR000408 | - | |
| Laca7g02760 | 428 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 185 | 268 | IPR000408 | - | |
| Laca7g02760 | 428 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 132 | 184 | IPR000408 | - | |
| Laca7g02760 | 428 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 21 | 427 | IPR051210 | - | |
| Laca7g02760 | 428 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 255 | 265 | IPR000408 | - | |
| Laca7g02760 | 428 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 65 | 75 | IPR000408 | - | |
| Laca7g02760 | 428 | SUPERFAMILY | RCC1-BLIP-II | 19 | 342 | IPR009091 | - | |
| Laca7g02760 | 428 | PRINTS | Chromosome condensation regulator RCC1 signature | 81 | 97 | IPR000408 | - | |
| Laca7g02760 | 428 | PRINTS | Chromosome condensation regulator RCC1 signature | 373 | 394 | IPR000408 | - | |
| Laca7g02760 | 428 | PRINTS | Chromosome condensation regulator RCC1 signature | 24 | 40 | IPR000408 | - | |
| Laca7g02760 | 428 | PRINTS | Chromosome condensation regulator RCC1 signature | 132 | 148 | IPR000408 | - | |
| Laca7g02760 | 428 | PRINTS | Chromosome condensation regulator RCC1 signature | 62 | 75 | IPR000408 | - | |
| Laca7g02760 | 428 | PRINTS | Chromosome condensation regulator RCC1 signature | 171 | 187 | IPR000408 | - | |
| Laca7g02760 | 428 | PRINTS | Chromosome condensation regulator RCC1 signature | 187 | 201 | IPR000408 | - | |
| Laca7g02760 | 428 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 328 | 377 | IPR000408 | - | |
| Laca7g02760 | 428 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 131 | 181 | IPR000408 | - | |
| Laca7g02760 | 428 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 330 | 374 | IPR000408 | - | |
| Laca7g02760 | 428 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 377 | 426 | IPR000408 | - | |
| Laca7g02760 | 428 | Gene3D | - | 11 | 230 | IPR009091 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Laca7g02760 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Laca | Laca-Chr6:20967205 | Laca7g02760 | Laca-Chr7:132092385 | dispersed | |
| Laca | Laca-Chr7:132092385 | Laca5g00830 | Laca-Chr5:46175094 | transposed |