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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02782 ATGGGAATCATAGAAATGCGAGTACATGTAGATTGTCCAGGATGTGAGGACAAGATCCGAAAAGCTCTTCAAAGACTCAAAGGTGTTGAGAACGTAGATATAGACATGGGGTTACAGAAGGTGACAGTGACTGGATACGCTGAAGAGAAAAAGGTGTTGAAGACCGTGAGAAAGACTGGCCGCCGAGCTGAGATCTGGAACGTCCCCTACAACCCTGATCTCCGTAGCCATAACTACAACGTTAATCAATATGCGCAACAGCAACCACAAAACGGTGGTTCTGGCCATGGCCCAGGTCCCTCAGCGACATTCTACACCCGGCAGCCATCATCGGCGTCTTCATACAATTACTACAAACACGGTTATGATAACCACGAGGGTTATAACCCAGTCCAGTCATCAGGTTTGATTGGACACCAGACTGGTGCTGCTTTTAGTGATGAAAATACAAATGCTGCCTGCAACATCATGTAG 474 47.05 MGIIEMRVHVDCPGCEDKIRKALQRLKGVENVDIDMGLQKVTVTGYAEEKKVLKTVRKTGRRAEIWNVPYNPDLRSHNYNVNQYAQQQPQNGGSGHGPGPSATFYTRQPSSASSYNYYKHGYDNHEGYNPVQSSGLIGHQTGAAFSDENTNAACNIM 157
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02782 157 SUPERFAMILY HMA, heavy metal-associated domain 5 67 IPR036163 GO:0046872(InterPro)
Laca7g02782 157 CDD HMA 5 64 IPR006121 GO:0046872(InterPro)
Laca7g02782 157 Gene3D - 3 65 - -
Laca7g02782 157 MobiDBLite consensus disorder prediction 86 108 - -
Laca7g02782 157 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 3 157 IPR045181 GO:0046872(InterPro)
Laca7g02782 157 Pfam Heavy-metal-associated domain 7 61 IPR006121 GO:0046872(InterPro)
Laca7g02782 157 ProSiteProfiles Heavy-metal-associated domain profile. 1 64 IPR006121 GO:0046872(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02782 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr4:52932601 Laca7g02782 Laca-Chr7:133686001 dispersed
Laca Laca-Chr6:13106853 Laca7g02782 Laca-Chr7:133686001 dispersed
Laca Laca-Chr7:133686001 Laca8g00227 Laca-Chr8:6848898 dispersed
Laca Laca-Chr7:133686001 Laca9g01916 Laca-Chr9:52889514 transposed