Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Laca7g02782 | ATGGGAATCATAGAAATGCGAGTACATGTAGATTGTCCAGGATGTGAGGACAAGATCCGAAAAGCTCTTCAAAGACTCAAAGGTGTTGAGAACGTAGATATAGACATGGGGTTACAGAAGGTGACAGTGACTGGATACGCTGAAGAGAAAAAGGTGTTGAAGACCGTGAGAAAGACTGGCCGCCGAGCTGAGATCTGGAACGTCCCCTACAACCCTGATCTCCGTAGCCATAACTACAACGTTAATCAATATGCGCAACAGCAACCACAAAACGGTGGTTCTGGCCATGGCCCAGGTCCCTCAGCGACATTCTACACCCGGCAGCCATCATCGGCGTCTTCATACAATTACTACAAACACGGTTATGATAACCACGAGGGTTATAACCCAGTCCAGTCATCAGGTTTGATTGGACACCAGACTGGTGCTGCTTTTAGTGATGAAAATACAAATGCTGCCTGCAACATCATGTAG | 474 | 47.05 | MGIIEMRVHVDCPGCEDKIRKALQRLKGVENVDIDMGLQKVTVTGYAEEKKVLKTVRKTGRRAEIWNVPYNPDLRSHNYNVNQYAQQQPQNGGSGHGPGPSATFYTRQPSSASSYNYYKHGYDNHEGYNPVQSSGLIGHQTGAAFSDENTNAACNIM | 157 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Laca7g02782 | 157 | SUPERFAMILY | HMA, heavy metal-associated domain | 5 | 67 | IPR036163 | GO:0046872(InterPro) | |
| Laca7g02782 | 157 | CDD | HMA | 5 | 64 | IPR006121 | GO:0046872(InterPro) | |
| Laca7g02782 | 157 | Gene3D | - | 3 | 65 | - | - | |
| Laca7g02782 | 157 | MobiDBLite | consensus disorder prediction | 86 | 108 | - | - | |
| Laca7g02782 | 157 | PANTHER | COPPER TRANSPORT PROTEIN ATOX1-RELATED | 3 | 157 | IPR045181 | GO:0046872(InterPro) | |
| Laca7g02782 | 157 | Pfam | Heavy-metal-associated domain | 7 | 61 | IPR006121 | GO:0046872(InterPro) | |
| Laca7g02782 | 157 | ProSiteProfiles | Heavy-metal-associated domain profile. | 1 | 64 | IPR006121 | GO:0046872(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Laca7g02782 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Laca | Laca-Chr4:52932601 | Laca7g02782 | Laca-Chr7:133686001 | dispersed | |
| Laca | Laca-Chr6:13106853 | Laca7g02782 | Laca-Chr7:133686001 | dispersed | |
| Laca | Laca-Chr7:133686001 | Laca8g00227 | Laca-Chr8:6848898 | dispersed | |
| Laca | Laca-Chr7:133686001 | Laca9g01916 | Laca-Chr9:52889514 | transposed |