AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02785 ATGTCACTTCCAGCGTTTTTTGAAGCCGACGGCAAGAAAAACCCTGTCTTTGACGCGTTCCGCAACGTCAACCATGTATCACCAGAAGCAATTGTCGATCTCGACTACAATGGCTCAGATAGTGGCGCTCCTTGTCTTCAACAGATAAGCACCAATCTTGGTGCAATGTATAAGCAGATGGTCAGCAACGCCACTGACCCGTTAAGTTTCTTTGGTGGCGAGTTTCGGGCTGGAGATGACCCGTTCGGAAATGGTGACCCATCTATCGGGTCGATAGAGGCTGGTTGTCATACAGCAGTGCATAGATGGACAGGTAATCCAAGAATGCCAAACAACGAGGACATGGGGAATTTCTACTCTGCGGGGTACGACCCTGCGTTCTACGTCCACCATGCAAATGTTGATCGTATGTGGAAAGTATGGAAGGATTTAGGTATCAAAGGACACACTGAACCTACAGACCCTGATTGGCTTAATGCATCATACGTGTTTTATGATGAAAACGAAGAGCTTGTACGTGTTTACAACAAAGATTGTGTCCAAACTGAAAACTTAAAATATGATTTCGAATTATCCCCACTCCCTTGGCTCAAGAACCGACCCGTTGCACATACCAAACCAGAGACCACCACGAAACCTGTTGAAAAGGTTAAAGTGCCGGACGTGAAGTTCCCCATTAAGCTAGACAAGATACAGAAGGTACTTGTGAAGCGGCCAGCGAAAAACCGAAGCCAATCGGAAAAGGAAAAAGCGACTGAGCAGTTGTTGATCAAAGGAATCAAGTTTAATGTCTCCAAGTTCGTCAAGTTTGATGTGTTTGTTAATGACCAAGATGATGTTCCCACAAGCTCGGCATCCGAGAGCGAGTTTGCAGGTAGTTTCGCACAGTTGCCTCATCACCATGGTGGCCACAAAAAGTTAATGACAAGTGCAGCAAGGTTCGGTTTAACAGAGCTTTTGGAGGACATCGGAGCCGAGGATGATGAGTATATTTTGGTGACATTGGTGCCAAAGGTAGGGGCCGAAGATCTCACCATTGATGAAATCAAAGTGGAGTTGGTTCCTATTGTTTAA 1074 45.81 MSLPAFFEADGKKNPVFDAFRNVNHVSPEAIVDLDYNGSDSGAPCLQQISTNLGAMYKQMVSNATDPLSFFGGEFRAGDDPFGNGDPSIGSIEAGCHTAVHRWTGNPRMPNNEDMGNFYSAGYDPAFYVHHANVDRMWKVWKDLGIKGHTEPTDPDWLNASYVFYDENEELVRVYNKDCVQTENLKYDFELSPLPWLKNRPVAHTKPETTTKPVEKVKVPDVKFPIKLDKIQKVLVKRPAKNRSQSEKEKATEQLLIKGIKFNVSKFVKFDVFVNDQDDVPTSSASESEFAGSFAQLPHHHGGHKKLMTSAARFGLTELLEDIGAEDDEYILVTLVPKVGAEDLTIDEIKVELVPIV 357
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02785 357 Pfam Protein of unknown function (DUF-B2219) 224 353 IPR022740 GO:0004097(InterPro)
Laca7g02785 357 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 124 135 IPR002227 GO:0016491(InterPro)
Laca7g02785 357 PRINTS Tyrosinase copper-binding domain signature 96 107 IPR002227 GO:0016491(InterPro)
Laca7g02785 357 PRINTS Tyrosinase copper-binding domain signature 123 141 IPR002227 GO:0016491(InterPro)
Laca7g02785 357 Gene3D - 1 191 IPR008922 -
Laca7g02785 357 PANTHER TYROSINASE FAMILY MEMBER 3 321 IPR050316 -
Laca7g02785 357 Pfam Polyphenol oxidase middle domain 152 201 IPR022739 GO:0004097(InterPro)
Laca7g02785 357 Pfam Common central domain of tyrosinase 39 143 IPR002227 GO:0016491(InterPro)
Laca7g02785 357 SUPERFAMILY Di-copper centre-containing domain 12 196 IPR008922 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02785 K00422 polyphenol oxidase [EC:1.10.3.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
116404 Laca7g02785 Laca9g03277
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:133784883 Laca9g03285 Laca-Chr9:134674409 dispersed
Laca Laca-Chr7:133727316 Laca7g02785 Laca-Chr7:133784883 tandem