AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02799 ATGCAGCAAGATCGTCGAAGAAAGAGTCCAAAAGACATTGAGTTCTTCACTGAATATGGTGAATCAAACCGATACAAAATCCTGGAGATTATAGGAAAGGGAAGCTATGGAGTCGTTTGTGCAGCCGTCGACACACAGACTGGTGAAAAGCGGATTATGTTGCCACCATCAAGACGAGAGTTTAAAGATATTTATGTTGTATTTGAACTCATGGAGTCTGATCTTCACCAAGTCATAAAAGCCAATGATGACTTGACACATGAACACCATCGTTTTTTCCTCTATCAAATGCTACGAGCATTGAAATATATGCATACAGCAAATGTGTATCATCGAGATTTAAAACCAAAGAACATATTAGCAAATGCAAATTGCAAACTCAAGATATGCGACTTTGGATTAGCAAGAGCTGCATTTACTGATACACCCACAACAATATTTTGGACAGATTATGTTGCAACAAGATGGTATAGAGCTCCTGAGTTATGCGGATCTTTTTATTCCAAGTATACCCCTGCTGTTGATATATGGGGAATCGGATGTATTTTTGCTGAAGTATTAACAGGAAAACCACTTTTTCCTGGAAAAAGTGTTGTTCATCAATTGGAACTTATCACTGATCTTCTTGGAACACCATCACCAGATACCATTTCTAGAGTGCGTAATGACAAGGCAAGAAAATACTTGACTGATATGCGTAGAAAGAAAGCTGTCACATTTTCTGAGAAGTTTCTAGATGTTGATCCATTGGCACTCAGGTTATTGCAGAGGTTGTTGGCTTTTGATCCAAAGGATCGACCAACTGCTGAACAGGCATTAGCGGATCCTTACTTCAAGGGGCTATCGAAAGTTGAGAGGGAGCCATCTTGTCAATCGTTTTCAAAGTTGGAGTTTGAGTTTGAGAGAAGAAGAGTCACAAAAGAGGATATTAGGGAGTTGATATTCCGGGAGATTCTAGAATATCATCCTCAGTTGCTTAAAGATTACATGGCTGGAAATGATCGAACAAATTTCATTTATCCTAGTGCTATTGGTCAATTTAGAAGGCAGTTTGCGTATTTTGAGGAAAATGTTGGGAAAAGTGGGCCTGTTATACCTCCAGAGAGGAAGCATGTTTCTCTTCCTAGGTCAACGGTTTCTTCAAGTATGACTGCTCCAAAGCTGCAGCAATGTTTGGCTGCATTTGACAATAAGCCAGTGGTGGATAACAACAACATGTCAAATGGTGGTAGAGTTGCGGTAGATGCTTCTGGAAACATCTTTAGTGCTGCTGCTAGACCACCCCCAAGGATGCCCAAAGGAAGAGTTGTGGGGCCAGTTTTACCATTGGAGGGTAGGGGGGAGATGAAGGATGTGTATGATCCAAGGGTAATGCTTAGAAATGGTCCGGTTGGTGTTTCTCCACATTATGCATCATATAGGGGCAATAATGGAAATCAAGTAAAGATTCATGGGGGGCAAGAAGGGGATAGGGATTCATTGTCCTTGATGAAACAGCAACAGGGGGTGAATAGTAATCCTTATTACAACCACGGTCAACAGTCAAAGGGAATGGAGTCAAAGTTTATGTCACAGTCTCAGTCACAATCACAGTATGGGGTTGCGGTTGCTACTCATAGAGAGGTTGGTGTTGTTCAAATGGGATTATCGTAG 1653 41.14 MQQDRRRKSPKDIEFFTEYGESNRYKILEIIGKGSYGVVCAAVDTQTGEKRIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTHEHHRFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKICDFGLARAAFTDTPTTIFWTDYVATRWYRAPELCGSFYSKYTPAVDIWGIGCIFAEVLTGKPLFPGKSVVHQLELITDLLGTPSPDTISRVRNDKARKYLTDMRRKKAVTFSEKFLDVDPLALRLLQRLLAFDPKDRPTAEQALADPYFKGLSKVEREPSCQSFSKLEFEFERRRVTKEDIRELIFREILEYHPQLLKDYMAGNDRTNFIYPSAIGQFRRQFAYFEENVGKSGPVIPPERKHVSLPRSTVSSSMTAPKLQQCLAAFDNKPVVDNNNMSNGGRVAVDASGNIFSAAARPPPRMPKGRVVGPVLPLEGRGEMKDVYDPRVMLRNGPVGVSPHYASYRGNNGNQVKIHGGQEGDRDSLSLMKQQQGVNSNPYYNHGQQSKGMESKFMSQSQSQSQYGVAVATHREVGVVQMGLS 550
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02799 550 Gene3D Phosphorylase Kinase; domain 1 50 324 - -
Laca7g02799 550 SUPERFAMILY Protein kinase-like (PK-like) 21 282 IPR011009 -
Laca7g02799 550 Pfam Protein kinase domain 60 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Laca7g02799 550 SMART serkin-6 25 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Laca7g02799 550 Gene3D Phosphorylase Kinase; domain 1 2 49 - -
Laca7g02799 550 Gene3D Transferase(Phosphotransferase) domain 1 73 301 - -
Laca7g02799 550 FunFam Mitogen-activated protein kinase 73 301 - -
Laca7g02799 550 ProSiteProfiles Protein kinase domain profile. 1 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Laca7g02799 550 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 51 319 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02799 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:134753843 Laca8g04139 Laca-Chr8:190999017 dispersed
Laca Laca-Chr7:134753843 Laca9g03256 Laca-Chr9:132495203 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lacanog00142 . 4 372 MAP Kinase gene family AT4G01370 87.534 0.0 697.0
Lacanog03636 . 79 109 MAP Kinase gene family AT1G73670 83.871 2.25e-11 61.2
Lacanog03726 . 6 361 MAP Kinase gene family AT5G19010 71.067 0.0 539.0
Lacanog03999 . 4 370 MAP Kinase gene family AT3G45640 80.381 0.0 632.0
Laca1g00003 . 70 250 MAP Kinase gene family AT1G10210 24.88 1.10e-07 51.6
Laca1g00526 . 72 368 MAP Kinase gene family AT1G10210 75.758 4.91e-174 485.0
Laca1g01716 . 13 442 MAP Kinase gene family AT5G19010 73.721 0.0 659.0
Laca1g02353 . 10 395 MAP Kinase gene family AT2G43790 81.234 0.0 608.0
Laca1g03133 . 9 42 MAP Kinase gene family AT3G18040 76.471 3.37e-12 60.1
Laca1g03310 . 64 379 MAP Kinase gene family AT3G59790 35.329 3.97e-56 187.0
Laca2g02367 . 90 424 MAP Kinase gene family AT1G73670 36.842 9.14e-58 196.0
Laca2g03294 ACH 22 311 MAP Kinase gene family AT5G19010 31.23 1.00e-32 131.0
Laca3g01676 . 41 381 MAP Kinase gene family AT5G19010 78.431 0.0 593.0
Laca3g02184 . 1 363 MAP Kinase gene family AT2G18170 82.645 0.0 637.0
Laca3g03578 . 3 372 MAP Kinase gene family AT4G01370 87.297 0.0 695.0
Laca4g03332 . 1 370 MAP Kinase gene family AT1G10210 83.288 0.0 659.0
Laca5g00674 . 41 363 MAP Kinase gene family AT1G10210 83.282 0.0 580.0
Laca7g01796 . 1 559 MAP Kinase gene family AT5G19010 78.284 0.0 897.0
Laca7g01814 . 4 446 MAP Kinase gene family AT5G19010 77.427 0.0 720.0
Laca7g02379 . 270 332 MAP Kinase gene family AT2G18170 55.556 3.03e-18 75.9
Laca7g02799 . 1 598 MAP Kinase gene family AT3G14720 59.74 0.0 664.0
Laca8g00408 ACH 22 311 MAP Kinase gene family AT5G19010 30.284 1.98e-29 121.0
Laca8g01201 . 140 320 MAP Kinase gene family AT3G45640 34.466 1.98e-25 107.0
Laca8g01866 . 49 329 MAP Kinase gene family AT4G01370 40.418 1.50e-61 202.0
Laca8g02262 . 1 370 MAP Kinase gene family AT3G45640 81.892 0.0 646.0
Laca8g02272 . 11 372 MAP Kinase gene family AT4G01370 77.348 0.0 603.0
Laca8g04139 . 1 508 MAP Kinase gene family AT3G18040 80.233 0.0 825.0
Laca9g00681 . 17 372 MAP Kinase gene family AT4G01370 76.966 0.0 594.0
Laca9g01695 . 22 255 MAP Kinase gene family AT3G18040 33.878 6.42e-30 123.0
Laca9g03256 . 1 486 MAP Kinase gene family AT1G53510 75.0 0.0 746.0
Laca9g03784 . 140 228 MAP Kinase gene family AT1G07880 47.253 1.76e-24 94.7
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Laca Pkinase 2.7e-50 CL0016 PK CMGC_MAPK