AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02845 ATGGCCTCTCCCCATTGCATCTATACAACTTCCCTTCTACTTTTGCTCAGCTTTCAACTATTTTCCACCATTTCCGAAGCTGTTGTGCCAGCTTCAGACACCTTCAGTTACGTAAACGAAGGTGTTTTCGGAGATTATATCGTAGAGTACGATGCAAATTATCGTTTTCTTCCTCCCTTTTCTAACCCATTCCAGCTTTGTTTCTACAACACCACCCCTAACGCATACACTCTAGCTCTACGTATGGGTACAGTCCGATCGGAGGCGCTTATGCGTTGGGTTTGGGAAGCCAACCGAGGCAACCCAGTTCGTGAAAACGCTACCCTCACCTTCGGTACAGATGGAAACCTTGTCTTAGCAGATGATGATGGCCGGATTGCTTGGCAAACCAACACCGCCAATAAGGGTGTCGTCGGTTTTCAGTTGCTCCCCACCGGTAACATGGTTCTTCATGATGGCAAGGGTAATTTCATATGGCAAAGCTTCGACTCCCCAACTGATACTCTCTTAATCGGTCAATCTCTTCGAGCTGGTGGTGTCAGTAAGCTGGTGAGCCGGGCTTCCGCCGAGAACAACACCGATGGACCATATAGCTTGGTGATGGAGCCTAACATGCTAGCCTTGTATTACAAGAGCCCTAATTCACCTCGCCCAATGCTTTATTGGTCCTTATTCGTTGACAGAGTTAGTGTGCTCAATCTAACTCTTACTTCAGATCCAGCTACAACTGAGGGTTTTCTCTATTACTTCGAGTTTCTTTACTTTACGACAAACTCCCAGGCTGCTTCGGATGTCGACTTGACCTACGCCCACACACGATACAACAACACGTTATCATATCTTCGAGTAGGGATGGATGGGAACCTTAGATTCTTCACGTATAATCCAAACGTGCAAGTCTACGCTTGGGATGTGGCTTACGAGTTTATGGGCAGAGATTCCTTAGAAAGTGAGTGTCAGTTGCCGGAACGATGTGGGAAGTTTGGGCTATGTGAGAATAGTCAATGTGTCGCATGCCCAACACCAAACGGACTAAGTGGGTGGAGCACAGATTGTGAGGCAAAGAAGGTACACGAGGGGAGATGGTGGAACGAAGCAAAGTGA 1104 47.37 MASPHCIYTTSLLLLLSFQLFSTISEAVVPASDTFSYVNEGVFGDYIVEYDANYRFLPPFSNPFQLCFYNTTPNAYTLALRMGTVRSEALMRWVWEANRGNPVRENATLTFGTDGNLVLADDDGRIAWQTNTANKGVVGFQLLPTGNMVLHDGKGNFIWQSFDSPTDTLLIGQSLRAGGVSKLVSRASAENNTDGPYSLVMEPNMLALYYKSPNSPRPMLYWSLFVDRVSVLNLTLTSDPATTEGFLYYFEFLYFTTNSQAASDVDLTYAHTRYNNTLSYLRVGMDGNLRFFTYNPNVQVYAWDVAYEFMGRDSLESECQLPERCGKFGLCENSQCVACPTPNGLSGWSTDCEAKKVHEGRWWNEAK 367
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02845 367 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 58 353 IPR051343 -
Laca7g02845 367 CDD B-lectin 48 165 IPR001480 -
Laca7g02845 367 SMART blect-4 48 165 IPR001480 -
Laca7g02845 367 Gene3D - 31 163 IPR036426 -
Laca7g02845 367 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 214 IPR036426 -
Laca7g02845 367 Pfam D-mannose binding lectin 94 177 IPR001480 -
Laca7g02845 367 Pfam S-locus glycoprotein domain 256 344 IPR000858 GO:0048544(InterPro)
Laca7g02845 367 ProSiteProfiles Bulb-type lectin domain profile. 32 163 IPR001480 -
Laca7g02845 367 FunFam Os04g0303100 protein 84 218 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02845 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:136056948 Laca8g00971 Laca-Chr8:29510273 dispersed
Laca Laca-Chr7:136056948 Laca7g02846 Laca-Chr7:136093240 tandem