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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02849 ATGGCGGCATCGGCTGAACGCGAGAATTTCATCTATGTTGCCAAGCTCGCCGAGCAAGCTGAACGCTATGATGAAATGGTGGACGCGATGAAGAAGGTAGCAAAGTTGGATATCGAATTGACTGTTGAAGAGAGGAATCTGCTGTCAGTTGGATACAAGAATGTGGTGGGATCACGAAGGGCATCATGGAGGATTTTATCTTCAATTGAGCAAAAAGAGGAATCCAGAGGCAATGAAGTGAATGTTAAAAGGATTAAGGAATACAGACAGAAGGTGGAAACAGAGCTTTCCAACATCTGTGGTGATATCATGACTGTGATTGATGAGCATCTCATTCCATCTTCATCTGCTGGAGAATCCACTGTTTTCTACTACAAAATGAAAGGAGACTATTATAGGTATCTTGCAGAGTTCAAGTTTGGTAATGATAAAAAAGAGGCAGCTGATCAGTCACTGAAGGCTTATCAATTGGCATCTACTGCTGCAGAGGATTTATCTCCTACTCATCCAATCCGATTGGGGTTGGCTTTGAACTTCTCTGTTTTCTATTATGAGATTATGAATTCTCCCGAAAGAGCCTGCCACCTGGCGAAACAAGCATTTGATGAAGCTATCTCAGAGCTTGACTCCTTGAGTGAGGAATCATACAAAGATAGCACTTTAATTATGCAGCTTCTGAGGGACAATCTCACTTTGTGGACTTCTGATATTCCAGAAGATGGAGATGACCAAAAGATGGAGATCACAAAATCTGGTGCAGAAGATGCTGAGTAA 774 42.12 MAASAERENFIYVAKLAEQAERYDEMVDAMKKVAKLDIELTVEERNLLSVGYKNVVGSRRASWRILSSIEQKEESRGNEVNVKRIKEYRQKVETELSNICGDIMTVIDEHLIPSSSAGESTVFYYKMKGDYYRYLAEFKFGNDKKEAADQSLKAYQLASTAAEDLSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGDDQKMEITKSGAEDAE 257
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02849 257 SUPERFAMILY 14-3-3 protein 6 236 IPR036815 -
Laca7g02849 257 MobiDBLite consensus disorder prediction 236 257 - -
Laca7g02849 257 FunFam 14-3-3 protein epsilon 2 247 - -
Laca7g02849 257 PIRSF 14-3-3 1 247 IPR000308 -
Laca7g02849 257 Gene3D - 1 249 IPR036815 -
Laca7g02849 257 Coils Coil 194 214 - -
Laca7g02849 257 ProSitePatterns 14-3-3 proteins signature 2. 216 235 IPR023409 -
Laca7g02849 257 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Laca7g02849 257 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Laca7g02849 257 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Laca7g02849 257 PRINTS 14-3-3 protein zeta signature 153 179 IPR000308 -
Laca7g02849 257 PRINTS 14-3-3 protein zeta signature 207 236 IPR000308 -
Laca7g02849 257 PRINTS 14-3-3 protein zeta signature 180 206 IPR000308 -
Laca7g02849 257 PANTHER 14-3-3 PROTEIN 6 239 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Laca7g02849 257 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Laca7g02849 257 MobiDBLite consensus disorder prediction 238 257 - -
Laca7g02849 257 SMART 1433-4 7 247 IPR023410 -
Laca7g02849 257 Pfam 14-3-3 protein 14 234 IPR023410 -
Laca7g02849 257 Coils Coil 13 33 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02849 K06630 14-3-3 protein epsilon
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Event-related genes

Select Gene_1 Gene_2 Event_name
116410 Laca7g02849 Laca9g03196
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:136361485 Laca8g01418 Laca-Chr8:49219939 dispersed
Laca Laca-Chr7:136361485 Laca9g03196 Laca-Chr9:130600603 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lacanog03279 . 2 240 14-3-3 family AT1G34760 73.333 2.87e-132 373.0
Laca1g00116 ACH 3 259 14-3-3 family AT1G78300 88.716 8.05e-168 462.0
Laca2g01668 ACH 2 256 14-3-3 family AT1G78300 87.109 1.56e-163 451.0
Laca3g01631 ACH 6 264 14-3-3 family AT1G26480 81.081 5.14e-158 438.0
Laca4g00295 ACH 6 256 14-3-3 family AT1G26480 84.064 1.55e-160 444.0
Laca4g03961 ACH 2 256 14-3-3 family AT1G78300 87.109 9.02e-164 452.0
Laca4g04234 . 3 259 14-3-3 family AT3G02520 88.327 1.06e-164 457.0
Laca6g02795 ACH 7 266 14-3-3 family AT1G35160 84.733 6.26e-165 455.0
Laca7g02254 . 72 227 14-3-3 family AT1G26480 50.641 2.48e-45 159.0
Laca7g02849 ACH 1 263 14-3-3 family AT2G42590 76.806 6.77e-150 417.0
Laca8g01418 ACH 6 256 14-3-3 family AT1G26480 85.714 1.29e-162 449.0
Laca9g02460 ACH 7 266 14-3-3 family AT1G35160 83.525 5.75e-163 450.0
Laca9g02505 . 1 247 14-3-3 family AT5G65430 83.806 5.36e-156 431.0
Laca9g03196 ACH 1 263 14-3-3 family AT2G42590 77.186 2.46e-152 423.0