AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02853 ATGGCCGACGAGAAAGAGGTGAAGGAAGTGGTTGGAGAGAAGACCGATGATAAGAAAAAGAACATGAGCAAGAAGAAGAGCGGAATTCTCTCTCGGATTTGGAATACAGTGTTTAGGTCGCGAAGCGATGATTTTGAGAAGAGACTGCAGTATATATCTAAAGAAGAGGCTACGCTTCTATCGCGAATGAAGAGACGAGCTCTGAGATGGAGGCGAACAGCCAGGAACATAATCATCTTCTCTGTTATCCTTGAGTTTGTTGCAATTGGTTATGCTATCATGACAACAAGAACAGTAAACATGGACTGGAGAACGAGATCATTGCGAGTCCTACCAATGTTTCTTCTTCCTGCCATATCATTCGCTCTGCATTATGGACTTTTGAGCTTCACGAGATTCGGTGATCGAAGGGATCAGAAAGCACTAGAGAGGCTTCGCTCTGAAAGGCAAGCAAAAATCGATGAACTTAAAGAAAGGACTAATTACTACATTACTCAACAACTCATTCAGAAATATGATCCTGATCCAGCAGCAAAAGCAGCAGCTGCATCTGTTCTCGCATCAAAACTGGGTGCAGATTCAGGCCTGAAAATGTTTCTTGGAAACGAATCACAACCAAATCCGTATACCACAGGGAAGAACAACGAGGTTGAGGTGCATCAAACTACTGGTCTCAGGAAACGAAATCAATCAAACCTTAAATCTCAAGGAAGCAATACAGTAAATCAACAATCAGAAACAGAAATCGGAGATTTGGTTTCTGAGAGATCTTCACATGGTGATCTTGTTGTTGATCATCATGATCCTGCAACTTTAGGTGGTCAAGATGGTGGTTGGATTGCTCGAATTGCTGCAATGCTTGTGGGAGAAGACCCAACTCAATCATATGCACTTATATGCGGGAATTGCCATATGCATAATGGACTTGTGAGAAAGGAGGAATTCCCTTTTATTACTTACTATTGTCCCCATTGTCATGCGTTGAATAAACCAAAGAATTCAGGAGTTTCTTCTGAAGCAACCATGTCCCCTGTTTTGGGACCTTCAAGAACAGTAAGTGCAGATGTTAAATTGATTGAAGAAAATAATGAAAAGGTAGTACCTGGTGAGATTATCAGCCACGTGGCAGGTGATGTGGAGGAGAAAGAAGTGAGTGAGAAAATAGTGGGAGATGAGTGA 1179 41.98 MADEKEVKEVVGEKTDDKKKNMSKKKSGILSRIWNTVFRSRSDDFEKRLQYISKEEATLLSRMKRRALRWRRTARNIIIFSVILEFVAIGYAIMTTRTVNMDWRTRSLRVLPMFLLPAISFALHYGLLSFTRFGDRRDQKALERLRSERQAKIDELKERTNYYITQQLIQKYDPDPAAKAAAASVLASKLGADSGLKMFLGNESQPNPYTTGKNNEVEVHQTTGLRKRNQSNLKSQGSNTVNQQSETEIGDLVSERSSHGDLVVDHHDPATLGGQDGGWIARIAAMLVGEDPTQSYALICGNCHMHNGLVRKEEFPFITYYCPHCHALNKPKNSGVSSEATMSPVLGPSRTVSADVKLIEENNEKVVPGEIISHVAGDVEEKEVSEKIVGDE 392
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02853 392 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 23 341 IPR040115 GO:0071782(PANTHER)|GO:0071786(PANTHER)|GO:0071786(InterPro)
Laca7g02853 392 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 279 329 IPR019273 -
Laca7g02853 392 Coils Coil 139 159 - -
Laca7g02853 392 MobiDBLite consensus disorder prediction 1 24 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02853 K23292 endoplasmic reticulum junction formation protein lunapark
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Event-related genes

Select Gene_1 Gene_2 Event_name
115827 Laca5g02921 Laca7g02853
116413 Laca7g02853 Laca9g03183
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr5:184584569 Laca7g02853 Laca-Chr7:136809645 wgd
Laca Laca-Chr7:136809645 Laca9g03183 Laca-Chr9:130201778 wgd