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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02913 ATGGCGGCGAATGGCGTGAAATCGGCGGTAACATCCCAGGCATACCTGGAGGGATCTCAGGTCAAACAAACTAAATCACTCATCTCTGAGCTATGCCGTCTGTTTTACAACCTAGGTTGGGTCTCCGGCACCGGCGGAAGTATCACCGCCAAGGTCCACGACGACTCCGTTCCCAAATCAGAGCAACTCATAATCATGTCCCCCTCCGGTGTGCAAAAGGAAAGGATGTTAGAAGAAGACATGTATGTATTATCATCAACTGGTGATATTTTGTTTTCTCCATCGCCGAAGCCTTACCCTCATAAACCTCCCAAATGTTCCGATTGTGCACCTCTTTTCATGAAGGCTTATGATAAGCGTAATGCTGGTGCAGTCATTCATAGTCACGGAATGGAATCGTGTCTTGTAACTATGATGGATCCATTGGCGAAAGAGTTTAGGATCACTCACATGGAGATGATTAAAGGAATACAAGGCCATGGTTACTATGATGAACTTGTGGTTCCCATAATAGAAAACACAGCTCAAGAAAGAGAATTGACAGAATCTCTAGCTGCAGCAATTGAAGCATACCCAAAGACAACTGCTGTTCTTGTCAGAAACCATGCTGCGATTAAACTTCATCAACTAGGCCTTGACTGGTCAACTCCAAGTCATGGTCCTAAACCACTTTTATGTGGTCAAAGTCAAACTACAAACCCATCTCATCGTTGTGTTGTTCTTGATATTGAAGGGACAACAACACCTATATCTTTTGTCACTGATGTTCTTTTTCCATATGCACGTGACAATGTGCAAAAACACTTGGAAGAAACATATGACACTGATGCCACTCAAGATGATATTAAATTGTTACGTTCTCAAGTAGAAGATGATTTAAAAAATGGTGTTGCAAATGCTGTTACAATTCCATCTGATGAGGCTGGAAAACAGGAAGTGATTGCTGCTTTGGTTGCTAATGTTGAAGGGATGATAAAATCTGATAGGAAAATTACTTCCTTAAAACAGTTACAAGGTCACATATGGCAAACTGGATTTGAAAAAAATGAACTCAAAGGAGTTGTTTTTGATGATGTTCCTGTTTCTCTTCAAAAGTGGCATTCATCTGGTATAAAAGTGTATATATATTCAAGTGGTAGCAGATTGGCGCAAAGGCTATTATTTGGATACTCAAATCATGGGGACTTGAGAACATATTTAAGTGGATTTTTCGACACCACAGTGGGGAACAAGAAGGAAAGAAAAAGTTATGTTGAAATTTGTGAATCAGTTGGAGTTCATAAGCCTTCAGATGTCTTATTTGTTACAGATGTTTTTCAAGAAGCTGTAGCTGCAAAGGCAGCTGGTTTGGAGGTCATAATATCTGTTCGGCCTGGAAACGGGCAGCTGCCCGAGAACCATGGATTCAAGACAGTCAAGTCTTTTTCGGAGATATAA 1437 40.92 MAANGVKSAVTSQAYLEGSQVKQTKSLISELCRLFYNLGWVSGTGGSITAKVHDDSVPKSEQLIIMSPSGVQKERMLEEDMYVLSSTGDILFSPSPKPYPHKPPKCSDCAPLFMKAYDKRNAGAVIHSHGMESCLVTMMDPLAKEFRITHMEMIKGIQGHGYYDELVVPIIENTAQERELTESLAAAIEAYPKTTAVLVRNHAAIKLHQLGLDWSTPSHGPKPLLCGQSQTTNPSHRCVVLDIEGTTTPISFVTDVLFPYARDNVQKHLEETYDTDATQDDIKLLRSQVEDDLKNGVANAVTIPSDEAGKQEVIAALVANVEGMIKSDRKITSLKQLQGHIWQTGFEKNELKGVVFDDVPVSLQKWHSSGIKVYIYSSGSRLAQRLLFGYSNHGDLRTYLSGFFDTTVGNKKERKSYVEICESVGVHKPSDVLFVTDVFQEAVAAKAAGLEVIISVRPGNGQLPENHGFKTVKSFSEI 478
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02913 478 SFLD C1.5.4: Enolase-phosphatase Like 237 477 - -
Laca7g02913 478 CDD HAD-EP 238 459 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Laca7g02913 478 NCBIfam acireductone synthase 237 476 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Laca7g02913 478 SUPERFAMILY AraD-HMP-PK domain-like 22 204 IPR036409 -
Laca7g02913 478 NCBIfam HAD-IA family hydrolase 369 449 IPR006439 -
Laca7g02913 478 Pfam haloacid dehalogenase-like hydrolase 237 449 - -
Laca7g02913 478 PANTHER ENOLASE-PHOSPHATASE E1 231 478 - GO:0019509(PANTHER)|GO:0043874(PANTHER)
Laca7g02913 478 Pfam Class II Aldolase and Adducin N-terminal domain 28 204 IPR001303 -
Laca7g02913 478 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 250 346 - -
Laca7g02913 478 Gene3D - 20 220 IPR036409 -
Laca7g02913 478 SMART Aldolase-II-2 26 210 IPR001303 -
Laca7g02913 478 Hamap Enolase-phosphatase E1 [ENOPH1]. 237 478 IPR027511 GO:0019509(InterPro)
Laca7g02913 478 Gene3D - 346 478 IPR023214 -
Laca7g02913 478 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 21 204 - -
Laca7g02913 478 NCBIfam methylthioribulose 1-phosphate dehydratase 28 202 IPR017714 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Laca7g02913 478 Gene3D - 250 345 - -
Laca7g02913 478 SUPERFAMILY HAD-like 237 478 IPR036412 -
Laca7g02913 478 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1. 13 478 IPR027505 -
Laca7g02913 478 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 346 478 - -
Laca7g02913 478 SFLD enolase-phosphatase 237 477 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02913 K16054 methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77]
Laca7g02913 K09880 enolase-phosphatase E1 [EC:3.1.3.77]
Laca7g02913 K08964 methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
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Event-related genes

Select Gene_1 Gene_2 Event_name
116417 Laca7g02913 Laca9g03151
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:139193867 Laca9g03151 Laca-Chr9:129062961 dispersed