AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02918 ATGACCAATAATCATCCAGAAGAAATGGATAATGCTCTTTCAAACGAGAAACCTCATAAGCATAAGAACAAGAAGAGGAAATCAGAATCAAATGAAGATGAAGGAGATGAGGCTATTCAGGAAGACAGTGGTGATTTACAGAAGAAGAGGAAAAAAGATTCTTCCAAGAGTGAAGAAAATAACCAGGGCCAAGATGATGACCCGAAACCCAAAAAAGAAAAGAAGAAAAAGAAGAAATCAAAGGCAAATGAAGATGGGTATAATGGTAATTTGGAAGAAGACAATAGTGATTTACAGAAGAAGCATAAGAAGAAAAAGAGGAAAAGAGATTCGGAGACACAAACAAATGATGACCCAAAACCAAAAAAGGAAAAGAAAAAAAATAGGAACTCAAAATCAAATGAAGGTGGAGACAAGGGTAATTTGGAACAACAAAATGAAGACCCAAAAAACCCCAAAAAAAAGAAAACCAAAAAAGTTACCTTTTCGGGCCAAGTAGAAATCTTCCCATCGTCATCAAACAAAACCACCAAAAGACAACAAAAAACAAAATCCACCGACAACGACAACCTAGTACGAGGAAAAAGATTCACGCCAGAAGAAGACGAAATAGTAAAACAAGCCGTCGAAAACTACATAATCTCCAACAACCTAGGAGACGACGGCTTAAAAATGATCCTAAATTGCAAATCCCACAAAGGTATGAAAAGATGTTGGCAAGAAATCGGCAATTGCATCCCCTACCGCCCTCACACCGCCATCTACCATCGGGCCCACATCCTCTTTGAACAATCCGAACACCGCCAATGGACACCCGAAGAGATCAAATTCCTCAAAGAATCCTATAAAAAACACGGAAACAAATGGAAAATGATCGCGGAAGAACTCGGTAAACACCGCTTCCATGTCAAGGACACCTGGCGAAGAATAGTCAAACTTGAGAATTTGAAAATTGGGAAATGGAGTCAAGATGAGTATCAGAGTCTATACGATATGGTCAACTTGGATTTACAGATGAAGATCACGGGTCAAGAGAAAAAGTCAAAGCATGGGATGTTGAGGGATAATATTCCATGGACATCGATTAGTGAGAAGTTGACAACTAGAAGTGATTCGACTTGTTGTAGGAAGTGGTATGAACAGTTGACTTCGAGTTTAGTGGCTGAGAAGAAATGGTCGGATGCTGATGATTATTGGTTGGTTGGGAAGCTTTATGAGATTGATGCCGCTTGTGTTGAAGATGTGGAGTGGGATGAGCTTTTGGAGCATAGAAGTGGTGAGATTTGTAGGAAAAGATGGGATCAAATGGTGGTTTGTATTGGGAATCATAAGAGTAAGACATTTGGGGAACAAGTTGAGATATTGGCTAAACGTTATCGTCCTGAATTGGCTGAAACTAGACAGATTTGGGATGATAAACCCCTTGTTCCATGA 1434 39.47 MTNNHPEEMDNALSNEKPHKHKNKKRKSESNEDEGDEAIQEDSGDLQKKRKKDSSKSEENNQGQDDDPKPKKEKKKKKKSKANEDGYNGNLEEDNSDLQKKHKKKKRKRDSETQTNDDPKPKKEKKKNRNSKSNEGGDKGNLEQQNEDPKNPKKKKTKKVTFSGQVEIFPSSSNKTTKRQQKTKSTDNDNLVRGKRFTPEEDEIVKQAVENYIISNNLGDDGLKMILNCKSHKGMKRCWQEIGNCIPYRPHTAIYHRAHILFEQSEHRQWTPEEIKFLKESYKKHGNKWKMIAEELGKHRFHVKDTWRRIVKLENLKIGKWSQDEYQSLYDMVNLDLQMKITGQEKKSKHGMLRDNIPWTSISEKLTTRSDSTCCRKWYEQLTSSLVAEKKWSDADDYWLVGKLYEIDAACVEDVEWDELLEHRSGEICRKRWDQMVVCIGNHKSKTFGEQVEILAKRYRPELAETRQIWDDKPLVP 477
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02918 477 MobiDBLite consensus disorder prediction 79 100 - -
Laca7g02918 477 MobiDBLite consensus disorder prediction 1 193 - -
Laca7g02918 477 Pfam Myb-like DNA-binding domain 270 329 - -
Laca7g02918 477 ProSiteProfiles Myb-like domain profile. 270 311 IPR001005 -
Laca7g02918 477 PANTHER GB|AAC33480.1 7 476 - -
Laca7g02918 477 ProSiteProfiles Myb-like domain profile. 384 437 IPR001005 -
Laca7g02918 477 Gene3D - 311 387 - -
Laca7g02918 477 SMART sant 193 264 IPR001005 -
Laca7g02918 477 SMART sant 266 313 IPR001005 -
Laca7g02918 477 SMART sant 317 384 IPR001005 -
Laca7g02918 477 MobiDBLite consensus disorder prediction 110 154 - -
Laca7g02918 477 Gene3D - 271 310 - -
Laca7g02918 477 Coils Coil 88 108 - -
Laca7g02918 477 MobiDBLite consensus disorder prediction 41 72 - -
Laca7g02918 477 SUPERFAMILY Homeodomain-like 242 316 IPR009057 -
Laca7g02918 477 ProSiteProfiles Myb-like domain profile. 313 382 IPR001005 -
Laca7g02918 477 MobiDBLite consensus disorder prediction 164 179 - -
Laca7g02918 477 CDD SANT 270 298 IPR001005 -
Laca7g02918 477 SUPERFAMILY Homeodomain-like 362 436 IPR009057 -
Laca7g02918 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 267 315 IPR017930 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02918 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr5:159761419 Laca7g02918 Laca-Chr7:139261900 dispersed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Laca Myb_DNA-bind_6 2.3e-09 CL0123 TF MYB-related