AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02967 ATGTCTATCGCCGATCACCGCCGTTCTCATTCAGATGGAAAGCCCTGGCGACTATGTCCGTTTTGGCAATCTGGAACACCTTCTTCGTCGTTTTCATCGACGCGGAATCTTCAATTTCAGGCTCAGAAAAGCCATGAAAATGGCGTCAAATCGAACCGTCGGACTTCCAGTAAGGTATCCTCGGTGGCGAAATCGCTCCTACCAGCTAGGCGAAGACTCCGCCTTGATCCGGCTAACAACCTTTATTTTCCTTATGAACCTGGTAAACAGGTGAGAAGTGCTGTTCGAATCAAGAACCATAGCAGCTCTCATGTCGCTTTTAAGTTTCAAACTACTGCACCAAAGAGCTGTTACATGCGACCTCCTGGTGGTATTCTGGCACCCGGAGAAACCATTATTGCTACAGTTTTCAAGTTTGTTGAGCAACCTGAGAAAAACGAAAAACAACCAAACCAAAGGAGTAAAGTTAAGTTCAAGATCATGAGCCTGAAAGTGAAAGAAGGAACAGACTATGTTCCCGAATTGTTTGATGAACAAAAGAATGAAGTAGTTGTTGAGCGAATTTTACGTGTTATTTTCTTGAATGCAGAACGTCCTACCCCTGCATTGGAAAAACTAAAGCATCAGTTGGCTGAAGCTGAAGCTGAATTAGAGATACGAAAAAAGCCTCCAGTTGACAATTCTCCAAAAGTTGTTGGCCAAGGGATGGTTATAGACGAATGGAAAGAAAGAAGGGAGAAATACCTTGCTCGACAACAGGTTGAGGGTGTAGATTTGTCATAA 783 43.68 MSIADHRRSHSDGKPWRLCPFWQSGTPSSSFSSTRNLQFQAQKSHENGVKSNRRTSSKVSSVAKSLLPARRRLRLDPANNLYFPYEPGKQVRSAVRIKNHSSSHVAFKFQTTAPKSCYMRPPGGILAPGETIIATVFKFVEQPEKNEKQPNQRSKVKFKIMSLKVKEGTDYVPELFDEQKNEVVVERILRVIFLNAERPTPALEKLKHQLAEAEAELEIRKKPPVDNSPKVVGQGMVIDEWKERREKYLARQQVEGVDLS 260
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02967 260 ProSiteProfiles Major sperm protein (MSP) domain profile. 72 194 IPR000535 -
Laca7g02967 260 MobiDBLite consensus disorder prediction 32 63 - -
Laca7g02967 260 Pfam MSP (Major sperm protein) domain 73 181 IPR000535 -
Laca7g02967 260 Gene3D Immunoglobulins 68 196 IPR013783 -
Laca7g02967 260 SUPERFAMILY PapD-like 61 204 IPR008962 -
Laca7g02967 260 MobiDBLite consensus disorder prediction 32 46 - -
Laca7g02967 260 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 73 249 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02967 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:15130767 Laca7g02967 Laca-Chr7:141244387 dispersed