AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02992 ATGCCGGCCTTTAAAAACTCCGTATTCCCATTCCTAACTCGCCCTAAACTAAACCCCTCTTTGATCATCATCGCTTCCATATCTCTCTCAACAGAAATGGCGATTATACGGCAGAAGCACACACTACTTCTCCTACTACTATGTGTTATTCTTCCCTTTTCTCGATCGAAATCAGAATCGGAATCAGTAACGGAATCCTCCATTCACGATCTCCTCAAAAGCAAAGGCCTACCGGTTGGCCTGTTCCCGAAAGAAGTAGAATCATTCACTCTTTACGACACAGGGCTCCTTGAAGTGTTCCTGAGAGGACCTTGCTTAACGAAATTCGATACCATGGCTTTCTACGAGAGCACTGTGAGAGCTAACCTTACTTACAGAAGCCTTACCGGCGTTGAAGGTCTCTCGCAGGAAGAGCTTTTCCTCTGGTTGCCGGTGAAAGATATCATCGTCGACGATCCGAAATCTGGGCTGATATTATTCGACATTGGCGTCGCTCATAAGCAGCTGTCTCTCTCACTCTTTGAAGATCCTCCTGATTGCAAATCCGAAGATTTTTTGAATTTGAAGAAGAAATCTAGAAAGGAGATAGGATTTGATGCTCAAATGTAG 609 44.5 MPAFKNSVFPFLTRPKLNPSLIIIASISLSTEMAIIRQKHTLLLLLLCVILPFSRSKSESESVTESSIHDLLKSKGLPVGLFPKEVESFTLYDTGLLEVFLRGPCLTKFDTMAFYESTVRANLTYRSLTGVEGLSQEELFLWLPVKDIIVDDPKSGLILFDIGVAHKQLSLSLFEDPPDCKSEDFLNLKKKSRKEIGFDAQM 202
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02992 202 Gene3D - 55 185 IPR036758 -
Laca7g02992 202 Pfam Protein of unknown function, DUF538 68 175 IPR007493 -
Laca7g02992 202 FunFam Uncharacterized protein At3g07460 54 184 - -
Laca7g02992 202 SUPERFAMILY At5g01610-like 41 182 IPR036758 -
Laca7g02992 202 PANTHER T31J12.3 PROTEIN-RELATED 60 181 IPR007493 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02992 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3720001 Laca Laca1g03559 Laca-Chr1:149820329 Laca7g02992 Laca-Chr7:143418728
3756454 Laca Laca7g02992 Laca-Chr7:143418728 Laca9g00480 Laca-Chr9:10873061