AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g02997 ATGGACTCAGAACAAATTTTCAGCTACAGAACAACCGGTCAAACCTCATCATACCCACAAACTCCCCCAATCCCCACAAAACTAATCAATTCCCTAAAATTCGAATCAAGAAACTCCCCAAAATCCCCATTTTTAACACCTTTCGATTCAGAAACATTCACCACATTAAGCGACAACAGCCCTTCTTCCGTTGAAGATTGCACCTCTTTTAACCACAGTGGCACTGCTTACATGAAAAATGCTCTTCACGATATAGAAACCACCCTAATGGCTCCCGATGATGACGTCACCATGCCAATGACCCGTACGGGTCAACCCGGATCCAATCTAAACAACTTGCTTATCGCATGCGCAAGTGCTTTAGCAAGCAACAAGCTTGACGAATTTGAAAAATTAGTGGAGCAAGCAAGGGCATTTGTGTCAATTAGCGGCGACCCAATTCAACGTTTAGGCGCGTATATAGTCGAAGGGTTGGTAGCAAGAAAGGAATGTTCAGGGAACAATATTTATCGGGCTTTAAGGTGTAAAGAACCCGAAGGTAAAGAATTACTTTCCTACATGCATATTTTATACGAAATTTGCCCGTATTTAAAATTCGGGTATATGGCTGCAAACGGGGCGATAGCCGAAGCGGTTCGAACCGAAGACCGAATCCACATCATTGACTTCCAAATAGCCCAAGGCACCCAATGGATGACCCTTTTACAAGCCCTAGCGGCCCGGCCCGGTGGGCCCCCACACGTGCGTATCACCGGAATCGACGATCCCGTTTCCAGATACGCACGTGGTGATTCTCTGGAATTGGTCGGGAAACGGTTGGAATCGGTTTCACAAAAGTTCAAAATCCCAATCCAGTTTCATCCGATTCAAGTGTTTGCACCTTTTGTGACTAAAGAAATGCTCGATGTGAGGCCCGGTGAGGCTCTCGCAGTCAATTTTGCCCTTCAATTGCATCACATGGCGGATGAGAGCGTCGACTTGTCAAACCCTAGAGACGAGAGGTTAAGAATGGTGAAATCTTTGAACCCGAAAGTTGTTACGTTAGTTGAACAAGAATCGAATACGAATACTGCGGCGTTCTTTCCAAGATTCTTGGAGGTTTTGGACTATTACACTGCGATGTTTGAAAGTATGGATGTGACATTACCAATCGATAGGAAAAAAAGGATTAAGGTTGAACAACATTGTTTGGCGCGAGATATTGTGAATATTATTGCGTGTGAAGGGAAGGAAAGAGTTGAAAGACATGAGTTGTTTATGAAGTGGAGGTCGAGGTTTATGATGGCGGGGTTTACGCAGTGTTCGTTGAGTCCGTATGTGAATTCGGTTATTAGGAATCTTTTGAAGCGTTATTCAGAGAATTATATGTTGGTTGAAAAAGATGGAGCTATGTTGTTGGGGTGGAAAGAGAGGAATCTTATTTCGGCATCTGCCTGGCATTGA 1443 44.21 MDSEQIFSYRTTGQTSSYPQTPPIPTKLINSLKFESRNSPKSPFLTPFDSETFTTLSDNSPSSVEDCTSFNHSGTAYMKNALHDIETTLMAPDDDVTMPMTRTGQPGSNLNNLLIACASALASNKLDEFEKLVEQARAFVSISGDPIQRLGAYIVEGLVARKECSGNNIYRALRCKEPEGKELLSYMHILYEICPYLKFGYMAANGAIAEAVRTEDRIHIIDFQIAQGTQWMTLLQALAARPGGPPHVRITGIDDPVSRYARGDSLELVGKRLESVSQKFKIPIQFHPIQVFAPFVTKEMLDVRPGEALAVNFALQLHHMADESVDLSNPRDERLRMVKSLNPKVVTLVEQESNTNTAAFFPRFLEVLDYYTAMFESMDVTLPIDRKKRIKVEQHCLARDIVNIIACEGKERVERHELFMKWRSRFMMAGFTQCSLSPYVNSVIRNLLKRYSENYMLVEKDGAMLLGWKERNLISASAWH 480
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g02997 480 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 103 479 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Laca7g02997 480 Pfam GRAS domain family 111 479 IPR005202 -
Laca7g02997 480 MobiDBLite consensus disorder prediction 1 23 - -
Laca7g02997 480 ProSiteProfiles GRAS family profile. 101 480 IPR005202 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g02997 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3732531 Laca Laca5g03031 Laca-Chr5:189117331 Laca7g02997 Laca-Chr7:143543212
3737464 Laca Laca7g01839 Laca-Chr7:72519666 Laca7g02997 Laca-Chr7:143543212
3738289 Laca Laca7g02997 Laca-Chr7:143543212 Laca8g00485 Laca-Chr8:13575387
3756455 Laca Laca7g02997 Laca-Chr7:143543212 Laca7g03226 Laca-Chr7:150681896
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lacanog00538 . 177 544 GRAS Transcription Factor family AT3G03450 33.915 1.28e-55 192.0
Lacanog01197 . 37 486 GRAS Transcription Factor family AT4G36710 51.613 4.30e-144 421.0
Lacanog01842 . 306 584 GRAS Transcription Factor family AT5G66770 29.693 4.20e-12 66.6
Lacanog03473 . 1 654 GRAS Transcription Factor family AT1G63100 49.42 0.0 568.0
Lacanog04483 . 24 478 GRAS Transcription Factor family AT1G50420 38.428 8.86e-107 322.0
Lacanog05196 . 91 482 GRAS Transcription Factor family AT1G50420 56.122 3.51e-157 448.0
Lacanog05640 . 37 485 GRAS Transcription Factor family AT4G36710 50.862 5.80e-143 419.0
Lacanog06463 . 141 530 GRAS Transcription Factor family AT4G37650 52.357 4.80e-139 406.0
Laca1g00274 . 50 593 GRAS Transcription Factor family AT1G21450 57.428 0.0 598.0
Laca1g00374 . 154 519 GRAS Transcription Factor family AT5G17490 34.439 5.97e-56 192.0
Laca1g00375 . 154 518 GRAS Transcription Factor family AT5G17490 35.84 1.87e-54 188.0
Laca1g01531 . 327 767 GRAS Transcription Factor family AT1G07530 46.939 1.83e-149 444.0
Laca1g02939 . 1 479 GRAS Transcription Factor family AT1G50420 62.917 0.0 587.0
Laca2g00659 . 4 482 GRAS Transcription Factor family AT1G50420 63.674 0.0 606.0
Laca2g01720 . 23 529 GRAS Transcription Factor family AT1G14920 62.138 0.0 667.0
Laca2g02105 . 40 530 GRAS Transcription Factor family AT4G37650 56.634 0.0 520.0
Laca2g03574 ACH 31 640 GRAS Transcription Factor family AT5G52510 43.018 1.89e-135 408.0
Laca3g00045 . 92 554 GRAS Transcription Factor family AT4G00150 39.759 6.19e-93 299.0
Laca3g01661 . 14 506 GRAS Transcription Factor family AT1G14920 54.913 0.0 529.0
Laca3g01922 . 62 581 GRAS Transcription Factor family AT3G46600 44.571 1.16e-151 444.0
Laca3g01923 . 367 767 GRAS Transcription Factor family AT1G07530 54.613 2.20e-159 472.0
Laca3g02224 . 1 584 GRAS Transcription Factor family AT5G66770 57.358 0.0 585.0
Laca3g02368 . 12 409 GRAS Transcription Factor family AT3G49950 56.386 8.27e-160 454.0
Laca4g00259 . 14 404 GRAS Transcription Factor family AT5G41920 66.995 0.0 526.0
Laca4g00338 . 44 582 GRAS Transcription Factor family AT2G01570 63.225 0.0 663.0
Laca4g01249 . 150 221 GRAS Transcription Factor family AT4G36710 52.703 8.29e-16 71.6
Laca4g01725 . 1 525 GRAS Transcription Factor family AT4G17230 52.594 0.0 528.0
Laca4g02222 ACH 150 507 GRAS Transcription Factor family AT1G66350 34.301 4.86e-67 224.0
Laca4g02639 ACH 9 510 GRAS Transcription Factor family AT3G13840 48.936 1.11e-156 455.0
Laca4g04222 . 37 486 GRAS Transcription Factor family AT4G36710 48.918 9.09e-126 373.0
Laca4g04996 . 144 507 GRAS Transcription Factor family AT1G66350 43.117 2.58e-98 310.0
Laca5g00213 . 67 490 GRAS Transcription Factor family AT5G48150 68.531 0.0 606.0
Laca5g00333 ACH 161 529 GRAS Transcription Factor family AT1G14920 34.772 3.51e-75 246.0
Laca5g02663 ACH 1 510 GRAS Transcription Factor family AT3G13840 46.503 1.33e-150 440.0
Laca5g03031 . 45 490 GRAS Transcription Factor family AT5G48150 62.611 0.0 560.0
Laca5g03160 . 178 546 GRAS Transcription Factor family AT3G03450 28.982 1.63e-52 186.0
Laca5g03161 . 150 507 GRAS Transcription Factor family AT1G66350 28.571 1.82e-52 184.0
Laca5g03817 ACH 242 651 GRAS Transcription Factor family AT3G54220 79.952 0.0 659.0
Laca5g03858 . 73 713 GRAS Transcription Factor family AT2G37650 50.969 0.0 639.0
Laca5g04336 . 18 693 GRAS Transcription Factor family AT2G29060 44.932 0.0 550.0
Laca5g04714 . 276 650 GRAS Transcription Factor family AT3G54220 54.233 3.67e-142 418.0
Laca6g00049 . 129 555 GRAS Transcription Factor family AT4G00150 44.82 5.77e-110 341.0
Laca6g00172 . 35 332 GRAS Transcription Factor family AT1G63100 34.295 4.66e-30 118.0
Laca6g00173 . 411 654 GRAS Transcription Factor family AT1G63100 44.082 1.18e-52 177.0
Laca6g00534 . 169 547 GRAS Transcription Factor family AT3G03450 29.798 1.64e-57 199.0
Laca6g00535 . 397 583 GRAS Transcription Factor family AT2G01570 33.158 6.97e-33 121.0
Laca6g00537 . 170 547 GRAS Transcription Factor family AT3G03450 30.102 7.77e-56 194.0
Laca6g00548 . 170 546 GRAS Transcription Factor family AT3G03450 27.569 6.43e-50 178.0
Laca6g00549 . 137 547 GRAS Transcription Factor family AT3G03450 28.604 1.48e-49 183.0
Laca7g00228 . 87 555 GRAS Transcription Factor family AT4G00150 49.47 1.66e-160 471.0
Laca7g01445 . 13 120 GRAS Transcription Factor family AT1G14920 37.963 4.80e-18 77.0
Laca7g01838 . 1 85 GRAS Transcription Factor family AT3G49950 42.045 1.42e-17 75.5
Laca7g01839 . 149 409 GRAS Transcription Factor family AT3G49950 42.045 4.84e-61 195.0
Laca7g02682 . 43 490 GRAS Transcription Factor family AT5G48150 62.444 0.0 563.0
Laca7g02997 . 41 489 GRAS Transcription Factor family AT5G48150 56.522 3.58e-180 512.0
Laca7g03090 . 141 506 GRAS Transcription Factor family AT1G66350 35.233 1.14e-65 219.0
Laca7g03160 . 41 444 GRAS Transcription Factor family AT1G55580 47.407 2.36e-119 352.0
Laca7g03226 . 160 597 GRAS Transcription Factor family AT1G50600 63.053 0.0 581.0
Laca8g00206 ACH 36 640 GRAS Transcription Factor family AT5G52510 46.625 3.11e-145 434.0
Laca8g00485 . 40 714 GRAS Transcription Factor family AT2G37650 43.966 0.0 528.0
Laca8g01342 . 26 582 GRAS Transcription Factor family AT2G01570 53.633 0.0 546.0
Laca8g01979 . 15 713 GRAS Transcription Factor family AT2G37650 51.102 0.0 673.0
Laca8g02346 ACH 86 765 GRAS Transcription Factor family AT1G07530 45.797 1.27e-179 530.0
Laca9g00762 ACH 6 707 GRAS Transcription Factor family AT1G07530 44.568 0.0 543.0
Laca9g00763 . 300 764 GRAS Transcription Factor family AT1G07530 50.636 3.40e-165 489.0
Laca9g01098 . 193 584 GRAS Transcription Factor family AT5G66770 23.077 3.99e-17 82.4
Laca9g01099 . 258 544 GRAS Transcription Factor family AT3G03450 24.585 3.58e-17 82.4
Laca9g01100 . 113 515 GRAS Transcription Factor family AT5G17490 24.178 1.64e-18 86.3
Laca9g01101 . 107 515 GRAS Transcription Factor family AT5G17490 23.529 5.51e-17 81.3
Laca9g02840 . 40 444 GRAS Transcription Factor family AT1G55580 48.441 1.17e-121 360.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Laca GRAS 6e-130 CL0063 TF GRAS