AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g03075 ATGGATATTGAAATTGTTGGGCGCCATGCGCTCCTCTTCGATGATGATACAACGGCAGCCTTCGTCAACTCCCAAGACGCACTTGTTGACTGGAATTCTCTACTAGTCGATCGTTACGACGTTCGCCACCTCCTTTTCAGCCCTCCACCATCTCGGAGGCGGCGTAATCCTCAAACCTCGCATTCAACTTCCGCTGATGCGGAAATCGATTATGAACGGTACCTGGATCTCCCCTCACCTTCCGAGGAAGAAGAAGCAGATCCAAAACCGGAACCTGTGGGTGGATTTAATGCTGTTCCTTTTTCTTATGGCAACAATGAGGAATCTAATGATCAAAAGAATGCTGAAGCTGAATCAGAAGTCCCTGCATTTCATCCCCCTTTCCCAGTTCCTGAAAGCCTGGTTCAGAATTTGCCTCCTACAGAGAAAGTACATCAGATTATTTCAAGGACTGCTCTTTTTGTCAGCAAAAATGGAGGTCAATCAGAGATTGTTCTTAGAGTCAAACAAGGAGACAACCCAACTTTTGGGTTCTTAATGCCTGATCATCACCTACACCCTTACTTCAGGTTTCTGGTCAACCACAAGGATCTCCTTCAGTCAAACGAAGAGAAAACATCAAATACAGAGAATCCCACTGGAGCTTTGTCTTTACTTGGTTCTGTATATGGCACTGGTGAAGATGATGATAATGGAACAGAACATCCTTCATCATCACCATCTGGAAAAGATGATTTTGCCAGCTGGCAAACTAAAACCACCATATTGCCAGCTGGCAGAGACGAGTCTGTTTCAAAGCAATCACTAGATGGTGCTCCTATTATTAGAAAGAATTCTTTTCCAAATGCAGTGAAGGCTGTAAAAACGAGCATCATGAGAAAAGGTGAATCATCAACATCAAGTTCAGTCTCTGGTATTCGGGCTTCTTCTCTTCCTCCAATTCCCAAAACTGCTGAGCTCATGGTTATGGATCCTCCATCTGACATGAAAAAACTGGTTGAGAAGATTGTAGAATTCATTATCAAGAATGGGAGGCAGTTTGAAGGAGTACTTATGGAACAAGATCGTGGTCATGGAAGATTCCCTTTTCTAATCCCATCTAACATATTCCATCCATACTATCTAAAAGTTCTTCACACAGCTCACGAGTCGAAGTCAACTGTCAAGAGTTTCCACAATGAGAAAGGAAACGCTTCCCACAAGAAAATGTTGAACTCAAGGGATACAGAAGCTTCTTTAATGGAATCTGATGATATACCTCTTGATTCCGATAGAAAAGAGAAGTTCAAAATGGTAATGAATAAGTCTAAAAAAGAAGCATCAGATCCTCCATCTAAACCCACACAAGAACAAAGTGTCCAGGTGGATGCTGCTCAAGCTGCAGCTATTCTTCAAGCTGCTACACGTGGCATCAAACATCCAAATTTAGGGATCTTGAATGGAAAATTTGGTGGACAACAACAACAACAATCATCTTCTTCTAATGTAAATGAAACTGATTCCAATGAGCAAAAGTTAAAAGCTGAGAGACTAAAACGGGCTAAAATGTTTGTGGCAATGCTGAAAAGTGGGACCAACCCATCAAAAGCCGAACCCACACGTGGCTTATCAGCTGAGCCACAAGTATCATCAGACAAAAAAATAAAATCAGAAAAGGAGCATTTGGATGATGAAAAACGTTCAAAGAGGAAATACAGAGATAGATCTAGCATACATAATAATGATATCGATGATGATGAGGGTGATGAGAGAGAAGAAAAAAGGTCACATAGACACCATAAGAAGAAGAAGCATAGATCTCATGAGAGTGAAGAAGAAAGACATCATAGTACTTCTCATAAACATGCTGACGTGGACAAAAAAGATCACAAAAGGAAAAAGAAGCATCGTTCTTCTAGTAGTTCAGATGATGAAGATGAACATGAATATGAACATTCTAGAAGGAAACATCGGTCCCACAAGTCTTCTTCTCATAAACATAGGAAAAGTCATTCTCGTTCTTCTAGGCATAAACATAAGCATACTCATGATGATGGAAAGGCTTCAAATTCAGAAGAAGGGGAGATGAGTTCAAAAAGGGGACATGTGGTTGATAATGTCAGTAGAGAAGCTTCTGTTGATGTGTCAAGTTCTTCATATCAAGAACAAAAGCCACAGCCCTCTCAGATAACTGAGGTTCCTGATGAACTTAGAGCCAAAATCAGAGCAATGTTGATGTCTACAATTTGTTTGGGTGCGTTGAATCCCTCTACGAATTGCTTCTGTATAGAGGTGGAGTTTTCATTGTGGCAGACCAAGTGTTTGACTAAAGTCCTCAAAGAAGAGGTTGCCGCCTTCGATGTCCTCAAAGAAGAGGCTGCGCATTAA 2367 41.19 MDIEIVGRHALLFDDDTTAAFVNSQDALVDWNSLLVDRYDVRHLLFSPPPSRRRRNPQTSHSTSADAEIDYERYLDLPSPSEEEEADPKPEPVGGFNAVPFSYGNNEESNDQKNAEAESEVPAFHPPFPVPESLVQNLPPTEKVHQIISRTALFVSKNGGQSEIVLRVKQGDNPTFGFLMPDHHLHPYFRFLVNHKDLLQSNEEKTSNTENPTGALSLLGSVYGTGEDDDNGTEHPSSSPSGKDDFASWQTKTTILPAGRDESVSKQSLDGAPIIRKNSFPNAVKAVKTSIMRKGESSTSSSVSGIRASSLPPIPKTAELMVMDPPSDMKKLVEKIVEFIIKNGRQFEGVLMEQDRGHGRFPFLIPSNIFHPYYLKVLHTAHESKSTVKSFHNEKGNASHKKMLNSRDTEASLMESDDIPLDSDRKEKFKMVMNKSKKEASDPPSKPTQEQSVQVDAAQAAAILQAATRGIKHPNLGILNGKFGGQQQQQSSSSNVNETDSNEQKLKAERLKRAKMFVAMLKSGTNPSKAEPTRGLSAEPQVSSDKKIKSEKEHLDDEKRSKRKYRDRSSIHNNDIDDDEGDEREEKRSHRHHKKKKHRSHESEEERHHSTSHKHADVDKKDHKRKKKHRSSSSSDDEDEHEYEHSRRKHRSHKSSSHKHRKSHSRSSRHKHKHTHDDGKASNSEEGEMSSKRGHVVDNVSREASVDVSSSSYQEQKPQPSQITEVPDELRAKIRAMLMSTICLGALNPSTNCFCIEVEFSLWQTKCLTKVLKEEVAAFDVLKEEAAH 788
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g03075 788 Gene3D Surp module 317 387 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Laca7g03075 788 MobiDBLite consensus disorder prediction 647 676 - -
Laca7g03075 788 SMART surpneu2 145 198 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Laca7g03075 788 SMART surpneu2 330 383 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Laca7g03075 788 ProSiteProfiles SURP motif repeat profile. 332 374 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Laca7g03075 788 MobiDBLite consensus disorder prediction 481 501 - -
Laca7g03075 788 Coils Coil 548 568 - -
Laca7g03075 788 MobiDBLite consensus disorder prediction 677 700 - -
Laca7g03075 788 MobiDBLite consensus disorder prediction 599 618 - -
Laca7g03075 788 MobiDBLite consensus disorder prediction 46 114 - -
Laca7g03075 788 MobiDBLite consensus disorder prediction 703 723 - -
Laca7g03075 788 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 2 726 IPR040397 GO:0000395(PANTHER)
Laca7g03075 788 MobiDBLite consensus disorder prediction 478 505 - -
Laca7g03075 788 SUPERFAMILY Surp module (SWAP domain) 123 194 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Laca7g03075 788 MobiDBLite consensus disorder prediction 631 646 - -
Laca7g03075 788 SMART DRY-EERY-2 1 107 IPR019147 -
Laca7g03075 788 MobiDBLite consensus disorder prediction 203 248 - -
Laca7g03075 788 MobiDBLite consensus disorder prediction 526 540 - -
Laca7g03075 788 Pfam Surp module 146 194 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Laca7g03075 788 Pfam Surp module 331 378 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Laca7g03075 788 MobiDBLite consensus disorder prediction 204 218 - -
Laca7g03075 788 MobiDBLite consensus disorder prediction 544 588 - -
Laca7g03075 788 ProSiteProfiles SURP motif repeat profile. 147 189 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Laca7g03075 788 Pfam Alternative splicing regulator 2 121 IPR019147 -
Laca7g03075 788 MobiDBLite consensus disorder prediction 388 454 - -
Laca7g03075 788 MobiDBLite consensus disorder prediction 66 90 - -
Laca7g03075 788 MobiDBLite consensus disorder prediction 523 726 - -
Laca7g03075 788 SUPERFAMILY Surp module (SWAP domain) 312 378 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Laca7g03075 788 MobiDBLite consensus disorder prediction 388 444 - -
Laca7g03075 788 Gene3D Surp module 140 195 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g03075 - -