AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g03076 ATGGAATTCAAAACGCGTGATTACAGAGCCGAAGACAAAGTCTATTCACTTACCCGAATTTCGGTTTCTTCGCATCCTCTCTGCTCGTCAGCATCTTCATCCTTATTACATACACAGGATCATGGGAGCACTGAATTCTTTGATCCATTAAGGGGGCTATCAACAGAAACGTTGGAGCCAGTTGAAAATACGGCAGTTGCAGAAAAGCTTCCTGCTACCCAACCAACCTCTCATCTCTCTTCAAAGAAGGAGTGGACATCCTTTAATAAGCTACTAATGCAGAGATTTCCTGTCCCAAAAATGATTTCAGTTTCTTCGTTTTCAAGCAAAACCATAAAAGGCGGCAAGGCAAGTGGAGAACTATCATCAAATATTCAGTCAGATGAATTGAATGATTCTCAAAAGTTGAAGGAAGGAGGATTCAAGATTGTTAGCCAGCAGGAGTACATTAAACGGATGCATGGACTTAAAGATGAGATCATGCGTTCTTGGCATTCTGATGATCGTGTAACAACCTTAAAGTTGTCAATTAAGGTTGCTAGGCTTCTGATGGACACATCTGTGGCACAATTTTATCCAACATTATTTGTTCTTAGTGCTGATATAATGGACATGCTTGGTGATATGGTATGGGATCGGATTAAACAGAAAGCCGAGTTTGCAGATGATGGAACTAAAATATGCTCTTTATCAGATGACTTTGATGCAAATAGTATATGCTTTGAAGCTAAGGAGACATGCAACAATTGGTTCAGAAAAATTGCTTCCATCCACGAGCTTCTTCCACGCATCTATCTTGAGCTTGCGATATTGCCATGCTGGCGATTTTTGCATGATAATGTGATGGATGACCTCATGCGATTGGTTACAATGATAAGAGGGGTTGCAGATCCATTAGCATCAGCCTACTGTCGCTTCTTTTTGCTTCACTGTGCCCAAAAACTTCCCCAACTCGATACAGGGCATCTGATAGCATGCATTAGTGACACAAAAGTTGTACTTACACGGATTGTATCCATGAAAGAAACCAAGTATGGGAACTTTTTGGGAGATCGAAGGTTGGTTATCAGCTTGATGGAACCAACAATTGAGTATACTATGAAATGCATTTTTAGGGACCCAAATCAGGTTGCTGATATGATTGTGAGACTTGGATTAGGGAATAATTCTTTGGAGTTATATGGAGAAGTTCCTTGGATATCGATTATTCTCCATTATTTACTCAGGGAACTTCCAACTGATGTAGTATGTTCCAATGCTGTAGAATTTCTTCACCTTGTTGACTGCAGCTCTGATTATTCGTTTGACCAGTGTTTAAATTACAAGGTGCTTGGGCTGAAGCTTTGCGAGGGAATATCTCAAGTGAACACAGTTGATGTATTAATTGATGAAGTAATTCAGGTTGCTACAAAAAGAAAGAGCCTTGATGAGTACTTGAAGATCTTGGATGCCTATATGGATATTACTCTTCAATATAAGACTGATCAGTATCTAAGCTCCATTCTAAGTGAAATATTTGAGAGATTATGCAATGAAGTGGTTACTGAAGATGAACTAGCTAGCCTGCAATCAATTATTGTGAAACTGGTCACACATTTTGATGATATGAAACATGTTTTTGATCTGAACTATGTTGTTGACATATTAGATGTAATGCATGGAAGCTCAAGAAGCATTGTGAGTATGCACATCCTCAATAATGCCACAAGAAATGATGACATCAGTGATCCTACCACAATAAAACTTCTTTTTGATGTTGCCCAGTCTCTGCATGATAGTGTTGATTTCTCAAGCACAAAACAGGATGATAATCAACAAGCTGAGCGATTAATTGTTCGTTTTATAGATAAGGTTGACCATGGTGTGGATTTGGACCGATATTTGACTTTCTTGATTGAGTGTCGTGGAGCTTTCAGCAGCATGAATGATCTGAAGGAGATTCTTGTTCATTCCAGCAATCTTTTAGCAACCAGAGCTTTAAGATTGAGAGAGAAAAAAGATACTTCAAATTTTATAAAATCCTGCATTACTTTTAATGAAGTTACAATACCCTGTATTCCATCTTATTCCAGGCAGTTAATCTTATACCTTGAGACCGCAGAGGTTTCTTTGTTGGGTGGTTTGATTTCTCATTCAGATGGGCTTTTAGACTCTGCTATCAGCTGCTTACAAGATGTTAACTTGGTAGATGGCATGCGTAAGAATGAAGATGCTGATGGTATTGTTTCCTTAATGAGAAAGCTCTGCAGCTTCATGCTTATGGTTCCAGGTAATTTGGAACAAGGAGTTACCTACATTCCAAAGAACATATTATCCTTGCTTGATTCCCAATCATGGATTACACCAAAATTAAGGATACGGGTTTTATGTTCACTTCTTTCCTTATCTGCAACATTTTCTCAAAATGAGCTCCCTTATCATCCAATTCATGAAGAGGTTTTTGGCAATGACAGTTTATTCTTTGGTGATGCAAGATACAGCCAAGAACTTGTATCATTATCTACTCTTATTCTTCATAACATGGTTGATATTATTCCACAAGAATCTTCACAGGCTACACGAGGAAACTTGGCACTTGAAGCTTGCAACTGTATTGCCATGTCTTTCAATGTGAATCAGGAGATATCTTCCGTATGCTCTAAGTTGGTGGAGATCGCCAGATCATGTCTTGGGCCTGCTGATAAATATTTGCAATCGACTATCAATTTTGTGCATAAACAGTCCCCGGTGTCTGTTGGGGGAAAATGA 2748 38.76 MEFKTRDYRAEDKVYSLTRISVSSHPLCSSASSSLLHTQDHGSTEFFDPLRGLSTETLEPVENTAVAEKLPATQPTSHLSSKKEWTSFNKLLMQRFPVPKMISVSSFSSKTIKGGKASGELSSNIQSDELNDSQKLKEGGFKIVSQQEYIKRMHGLKDEIMRSWHSDDRVTTLKLSIKVARLLMDTSVAQFYPTLFVLSADIMDMLGDMVWDRIKQKAEFADDGTKICSLSDDFDANSICFEAKETCNNWFRKIASIHELLPRIYLELAILPCWRFLHDNVMDDLMRLVTMIRGVADPLASAYCRFFLLHCAQKLPQLDTGHLIACISDTKVVLTRIVSMKETKYGNFLGDRRLVISLMEPTIEYTMKCIFRDPNQVADMIVRLGLGNNSLELYGEVPWISIILHYLLRELPTDVVCSNAVEFLHLVDCSSDYSFDQCLNYKVLGLKLCEGISQVNTVDVLIDEVIQVATKRKSLDEYLKILDAYMDITLQYKTDQYLSSILSEIFERLCNEVVTEDELASLQSIIVKLVTHFDDMKHVFDLNYVVDILDVMHGSSRSIVSMHILNNATRNDDISDPTTIKLLFDVAQSLHDSVDFSSTKQDDNQQAERLIVRFIDKVDHGVDLDRYLTFLIECRGAFSSMNDLKEILVHSSNLLATRALRLREKKDTSNFIKSCITFNEVTIPCIPSYSRQLILYLETAEVSLLGGLISHSDGLLDSAISCLQDVNLVDGMRKNEDADGIVSLMRKLCSFMLMVPGNLEQGVTYIPKNILSLLDSQSWITPKLRIRVLCSLLSLSATFSQNELPYHPIHEEVFGNDSLFFGDARYSQELVSLSTLILHNMVDIIPQESSQATRGNLALEACNCIAMSFNVNQEISSVCSKLVEIARSCLGPADKYLQSTINFVHKQSPVSVGGK 915
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g03076 915 PANTHER ESOPHAGEAL CANCER ASSOCIATED PROTEIN 2 907 IPR029705 GO:0005768(PANTHER)|GO:0032456(PANTHER)|GO:0032456(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g03076 K25731 VPS35 endosomal protein-sorting factor-like
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr1:137215714 Laca7g03076 Laca-Chr7:145451138 dispersed
Laca Laca-Chr3:146354812 Laca7g03076 Laca-Chr7:145451138 dispersed
Laca Laca-Chr3:174128166 Laca7g03076 Laca-Chr7:145451138 dispersed