AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g03081 ATGGCAAGGCGCAATCACATGGATGATCCGGTTGCAATTCGTCTTGTCGTTTGGAAGAAAAAGGATGAGGAAGAAGATGCCATCGATCGATCTAGGTTGTTAGCCATGAATAGTAATCCAGCTACGCCGATGAACGCAAATGCTCCGTCGTCAAGCTCCGGTGGCGCTGGATCCCCCGATTCAACTGCTCCAAGGAGAAATTCGAAACGACCTAAATATTCTAGGTTTACACAACAGGAGCTTCCGGCATGTAAGCCAATTCTGACTCCAAAATGGGTGATTTCAGCTTTCATGCTTGTAACCATTGTCTTCATACCAATAGGACTTGCTTCCCTCTTTGCTTCTCGTGATGTAGTTGAAATCATTGACCGATACGATAATGCCTGCGTACAAGGGTCAAAAAGTCAAAAGGTGGAATATATACAATCCAATGCAAGTAAGACCTGCACAAGAACCTTGACAGTCACAAAGCGTATGAAGCAGCCTATATACGTGTACTACCAACTGGACAATTACTACCAGAATCATCGGAGGTATGTGAAGAGCCGAAGTGATCAGCAATTAAGAAACCGTGGTGATGAAAATGACACAAGTTCATGTAAGCCTGAACATAATGCAAATGGGATGCCAATTGTGCCATGTGGACTTGTAGCATGGAGTTTATTCAATGACACCTATGCATTCTCCACCAGAAACAACCAATCATTACCCGTAAACAAGAGACATATTTCATGGAAAAGTGACAGAGAGGACAAATTTGGCAGTGATGTTTTCCCAAAAAACTTCCAAAATGGAAGTCTTATTGGTGGTGCACATCTCAACGAGTCCATACCATTAAGTGAGCAGGAAGACCTTATTGTGTGGATGAGAACTGCAGCTCTCCCAACTTTTAGAAAATTGTATGGAAAAATAGAAGTGGATATTGAAGCAGGAGAAACTATAACTGTTGTATTAGAGAACAACTACAACACTTATAGCTTTAGTGGCAAGAAGAAACTTGTGCTTTCAACCACAAGTTGGCTTGGAGGAAAGAATAACTTTATTGGCATCGCGTATCTTGCTGTTGGTGGATTGTGCTTCATACTAGCTACAACTTTCACTCTCATATATTTAGTTAAACCAAGGCATCTTGGAGATCCGAATTATTTGTCATGGAACAGAAACCCAGGTGGTCATTGA 1179 41.73 MARRNHMDDPVAIRLVVWKKKDEEEDAIDRSRLLAMNSNPATPMNANAPSSSSGGAGSPDSTAPRRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVTIVFIPIGLASLFASRDVVEIIDRYDNACVQGSKSQKVEYIQSNASKTCTRTLTVTKRMKQPIYVYYQLDNYYQNHRRYVKSRSDQQLRNRGDENDTSSCKPEHNANGMPIVPCGLVAWSLFNDTYAFSTRNNQSLPVNKRHISWKSDREDKFGSDVFPKNFQNGSLIGGAHLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIEVDIEAGETITVVLENNYNTYSFSGKKKLVLSTTSWLGGKNNFIGIAYLAVGGLCFILATTFTLIYLVKPRHLGDPNYLSWNRNPGGH 392
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g03081 392 PANTHER CELL CYCLE CONTROL PROTEIN 50 64 384 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Laca7g03081 392 PIRSF Lem3-Cdc50 42 388 IPR005045 GO:0016020(InterPro)
Laca7g03081 392 Pfam LEM3 (ligand-effect modulator 3) family - CDC50 family 112 375 IPR005045 GO:0016020(InterPro)
Laca7g03081 392 MobiDBLite consensus disorder prediction 23 75 - -
Laca7g03081 392 MobiDBLite consensus disorder prediction 182 204 - -
Laca7g03081 392 MobiDBLite consensus disorder prediction 35 64 - -
Laca7g03081 392 MobiDBLite consensus disorder prediction 182 200 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g03081 K26935 cell cycle control protein 50
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:84782060 Laca7g03081 Laca-Chr7:145549846 dispersed
Laca Laca-Chr7:145549846 Laca8g04505 Laca-Chr8:226505880 dispersed