AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g03115 ATGGCTTTCATCTCTAAGGTTCACAACTTCTCCGGCGACTTTCAAACTCCAGCAAATACCCTACCAATGTGGTATGATGAGACTGCACCCAATTTCTTCGACGACTACGGGATGAAAATGCCACCGGGATATGACATCACCACACCGTTATCTCGATCATCGTCATGGAAGACTTCGTTCCCGGAGAGATTTGGGTTGTCTGAGATGGTGGTTCCAACGTCGCCGACCGGATTTAATAACATTCCCGTCGGAAGTGATTATCACAAGGTTGAAAAGGATGACTATTTTTGTGGCAGCGGGGGCTTTAGTACCAACTCATGGTCGTCTTATCCCACTGCAACTGCCAATTGGGATATCGAAAACCAGAAGATGAGCACAGAAATCGAAGAACCGACATTAAAGATAGGTAGGTATTCGGTTGAAGAAAGGAAGGACAAGATCATGAAGTATCTCAAGAAGAGAAATCAAAGGAACTTCAACAAAACGATTAAGTATGAATGCCGAAAGACGTTGGCTGACAAGCGGATACGAGTTAGAGGGAGGTTCGCAAAGAATAAAAACGATCATCATCATCATCTTCATGAGCATCATCAACCATGTGAAGATCAAGTGCTTCCGAACATCAATACTAATAGTAATCCTTGTGAAGAAGACATTCAACAATTATACACCAATAACTTTCTGATGAAGCAGGATTATGATGAAGAAGAATGGCTGCAAGAAGCAATGGCAAGTTTATTGTATTCACCGTAA 753 42.36 MAFISKVHNFSGDFQTPANTLPMWYDETAPNFFDDYGMKMPPGYDITTPLSRSSSWKTSFPERFGLSEMVVPTSPTGFNNIPVGSDYHKVEKDDYFCGSGGFSTNSWSSYPTATANWDIENQKMSTEIEEPTLKIGRYSVEERKDKIMKYLKKRNQRNFNKTIKYECRKTLADKRIRVRGRFAKNKNDHHHHLHEHHQPCEDQVLPNINTNSNPCEEDIQQLYTNNFLMKQDYDEEEWLQEAMASLLYSP 250
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g03115 250 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 85 243 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(PANTHER)|GO:0009909(InterPro)
Laca7g03115 250 Pfam CCT motif 143 185 IPR010402 GO:0005515(InterPro)
Laca7g03115 250 ProSiteProfiles CCT domain profile. 143 185 IPR010402 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g03115 K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:146654187 Laca9g00690 Laca-Chr9:15854624 dispersed
Laca Laca-Chr7:146654187 Laca6g02317 Laca-Chr6:109019803 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Laca2g01105 . 277 392 COL gene family AT1G73870 45.69 1.35e-20 91.3
Laca3g01773 . 3 403 COL gene family AT1G25440 45.495 2.29e-106 320.0
Laca4g01868 . 1 357 COL gene family AT3G21880 39.379 5.69e-76 239.0
Laca7g00167 ACH 3 403 COL gene family AT1G25440 48.14 9.62e-104 311.0
Laca7g03115 . 382 426 COL gene family AT1G28050 51.111 1.04e-08 53.5
Laca9g00587 . 288 403 COL gene family AT1G25440 41.379 5.57e-19 82.8
Laca9g01992 . 305 352 COL gene family AT3G21880 54.167 3.86e-10 57.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Laca CCT 3.5e-17 CL0281 TR Others