AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g03126 ATGGAAGTTGAACCTCCGAATGTGAATCTCTTCTCTCCAAGCATTCTTCTGTCCAACAGGGAGATGATTGATCAAGGAAATAAGAATGTGTACGACGATGGTGTGAGATTTGGATATGGAATGGGGGAGATGGAGAGTGGAAATGGACTGCTTCCGATGTATGTTTCGTCTGGAATGATGATGGATATGATACCGGCGACTGGTTTGAAAGCCGACAGCGGACTCACTTACAGTCTTCCGATTTCGAGGAAACGTTCGCGTGATTCGTCTTCGTTTGATCCGACGGTTTTATCTTTTCCGAATGCTCAGTTTGTGAATCAGAACCAGAATGCAACGTTTACGTTTCTCGGTCATGACATCTCCATGCAAATCTATCAACAACAGCTTGAGATTGATCGGTTCATTGCTCTTCAGACGGAAAAGTTGAGAACAGAGATCGAAGCAACGCGAAGGAGAAACTCGATGAGGTTAATCGCAGCAGCGGAGGAACGAATCAAGAAGAGATTGAGATCTAAAGACGAGGAAATCGTGAAGATCAGCAAGTTGAATTCTGCTTTAGAAGAAAAAGTGAAATCCCTAAGCGTAGAGAATCAAATATGGCAACAAATGGCTCAAACAAACGAAGCTACAGCCAATGTTCTACGTCGCAATCTTCAAAGAATCCTAACCCAAATTCAACAACAACAACAACAACAAAATCAAACCGATCACGCAGATAATAATAAAACTTCAGTCGACGATGTTGAATCATGCTGCGGAAGCAATTACGAGGAAGAAGAAGAAGAGATTGAACAGAAGGTGCAGAAATTGTGGGAAGGTGGAGTCATGCGTGTTACTGCTACCTTGCAGACATCTCTGTATCTGTACTGA 870 42.87 MEVEPPNVNLFSPSILLSNREMIDQGNKNVYDDGVRFGYGMGEMESGNGLLPMYVSSGMMMDMIPATGLKADSGLTYSLPISRKRSRDSSSFDPTVLSFPNAQFVNQNQNATFTFLGHDISMQIYQQQLEIDRFIALQTEKLRTEIEATRRRNSMRLIAAAEERIKKRLRSKDEEIVKISKLNSALEEKVKSLSVENQIWQQMAQTNEATANVLRRNLQRILTQIQQQQQQQNQTDHADNNKTSVDDVESCCGSNYEEEEEEIEQKVQKLWEGGVMRVTATLQTSLYLY 289
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g03126 289 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 68 264 - GO:0004842(PANTHER)|GO:0043067(PANTHER)
Laca7g03126 289 MobiDBLite consensus disorder prediction 229 250 - -
Laca7g03126 289 Coils Coil 183 203 - -
Laca7g03126 289 MobiDBLite consensus disorder prediction 229 256 - -
Laca7g03126 289 Coils Coil 211 235 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g03126 K19042 E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:147267845 Laca7g03126 Laca-Chr7:147362168 tandem