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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g03128 ATGGAGACCTTAGCTCCTTCAATTCAAACCCTAATTTCTGCTAATTTCACCTCCAGATCTGTTTCCGCCACCGGATTTTCTCTACCATGCCTTAAATCTCCGGTGCTATGTCAACCGCGCAGACTCACCCTCATTAAAGCATCAGTCGCCGTCGAACAACAAACTCAGAAAAAGGTCGCCCTTATCAGAATTGGTACCAGAGGGAGTCCATTAGCTCTAGCACAAGCTTACGAGACACGAGATAAACTCATTGCTTCAAGTAGCGAGTTAGCAGAAGAGGGAGCTATCGAAATTGTAGTGATCAAAACAACAGGTGACAAAATTTTGAGTCAACCTCTTGCAGACATCGGTGGAAAGGGTTTATTCACTAAAGAAATAGACGAAGCACTTCTAAACAGTGAAATCGATATTGCTGTTCATTCCATGAAAGATGTTCCTACTTATCTCCCTGATAAAACAATCTTACCCTGCAATCTTCCACGTGAAGATGTTCGTGATGCATTCATTTCCTTGAATGCAAGTTCATTAGCAGATCTTCCATCTGGAAGTGTTGTTGGAACTGCATCTCTTCGAAGGAAATCTCAACTACTTCACAGATATCCATCACTCACTGTGCTTGAGAATTTCAGAGGGAATGTGCAAACAAGGTTAAAGAAACTAAACGATGGAGTTGTTCAAGCAACATTATTAGCTTTAGCTGGATTGAAACGATTAAGCATGACTGAACACGTGAGTTCAATTCTTTCCATTGATGACATGCTTCCAGCTGTTGCACAAGGTGCAATTGGGATTGCTTGTAGAAGTGATGATGATATAATGGCGAATTACATAGCGAAACTGAACCATGAAGAAACAAGATTAGCAGTTGCATGCGAGAGGGCTTTTTTGTTGACACTTGATGGATCTTGTAGGACACCGATAGCTGGATATGCGTGTAGGGACGAAGATGGAAATTGTCTTTTTAGAGGATTGGTAGCTTCGCCAGATGGCACTAAAGTGCTTGAAACTTCAAGAAAAGGAGCGTATGCGTATGAAGATATGATGTTGATGGGGAAGGATGCTGGTGAGGAGCTGTTATCGCGTGCGGGGCCCGGTTTTTTTGATAGTTGA 1110 42.34 METLAPSIQTLISANFTSRSVSATGFSLPCLKSPVLCQPRRLTLIKASVAVEQQTQKKVALIRIGTRGSPLALAQAYETRDKLIASSSELAEEGAIEIVVIKTTGDKILSQPLADIGGKGLFTKEIDEALLNSEIDIAVHSMKDVPTYLPDKTILPCNLPREDVRDAFISLNASSLADLPSGSVVGTASLRRKSQLLHRYPSLTVLENFRGNVQTRLKKLNDGVVQATLLALAGLKRLSMTEHVSSILSIDDMLPAVAQGAIGIACRSDDDIMANYIAKLNHEETRLAVACERAFLLTLDGSCRTPIAGYACRDEDGNCLFRGLVASPDGTKVLETSRKGAYAYEDMMLMGKDAGEELLSRAGPGFFDS 369
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g03128 369 ProSitePatterns Porphobilinogen deaminase cofactor-binding site. 292 308 IPR022419 GO:0004418(InterPro)|GO:0018160(InterPro)|GO:0033014(InterPro)
Laca7g03128 369 PRINTS Porphobilinogen deaminase signature 204 221 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Laca7g03128 369 PRINTS Porphobilinogen deaminase signature 105 125 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Laca7g03128 369 PRINTS Porphobilinogen deaminase signature 184 201 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Laca7g03128 369 PRINTS Porphobilinogen deaminase signature 291 308 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Laca7g03128 369 PRINTS Porphobilinogen deaminase signature 136 155 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Laca7g03128 369 NCBIfam hydroxymethylbilane synthase 62 361 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Laca7g03128 369 FunFam Porphobilinogen deaminase 282 369 - -
Laca7g03128 369 Gene3D - 62 271 - -
Laca7g03128 369 CDD PBP2-PBGD-1 61 340 - -
Laca7g03128 369 FunFam Porphobilinogen deaminase 62 165 - -
Laca7g03128 369 SUPERFAMILY Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 281 368 IPR036803 GO:0004418(InterPro)|GO:0033014(InterPro)
Laca7g03128 369 Pfam Porphobilinogen deaminase, C-terminal domain 287 359 IPR022418 GO:0004418(InterPro)|GO:0033014(InterPro)
Laca7g03128 369 PANTHER PORPHOBILINOGEN DEAMINASE 58 367 IPR000860 GO:0004418(InterPro)|GO:0004418(PANTHER)|GO:0005737(PANTHER)|GO:0006783(PANTHER)|GO:0033014(InterPro)
Laca7g03128 369 FunFam Porphobilinogen deaminase, chloroplastic 166 263 - -
Laca7g03128 369 Gene3D - 163 263 - -
Laca7g03128 369 Gene3D - 282 368 IPR036803 GO:0004418(InterPro)|GO:0033014(InterPro)
Laca7g03128 369 Pfam Porphobilinogen deaminase, dipyromethane cofactor binding domain 62 273 IPR022417 GO:0004418(InterPro)|GO:0033014(InterPro)
Laca7g03128 369 Hamap Porphobilinogen deaminase [hemC]. 61 361 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Laca7g03128 369 PIRSF PBGD 38 369 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Laca7g03128 369 SUPERFAMILY Periplasmic binding protein-like II 61 279 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g03128 K01749 hydroxymethylbilane synthase [EC:2.5.1.61]