AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g03181 ATGGCTTCCCCTGGAAATCAAAATCAACAACCAGGTGGAGCTCCATTTGATGTTCAAAGATTGTTCAACCCTTCTTCTTCACCACCACCGATTTCACCAACCCTACAAAACCCTAATCATCCTTATCCTCCACCATCTTCCGCCGCGTCGTATCCTCCACCCACGGTTACCGGAGGTCCATACTCTTATCACCCTCCTCAAACCAACCCTCTTTTCCACCATCAATTTCATATCCCACCACCCCCTTTCCACCCTCAACAACAACCACCACCAGAGAATCATTTGCCTTCTAATTTGCAACACCAGCGATCACTTCCTTACCCGACATCCCCTCTTCAACCTCCCAGCCCTAAAAACACGAACCCTAACCATGGAGCTCGACTCATGGCTCTTTTAAGCGCCCCACCGCCTTCCACTCCCGATATTCCTTCCCAATCATCCATCCCTTTACCTAACCCTAATCTCAACCCTATGCTCCCTTCATCGACCGGTCCATCGCGTATGTCGAGCAGTAAGCTACCTAAGGGACGGCATTTAGTCGGTGATCGCGTTGTTTATGACATAGATGTTAGGTTGCCTGGAGAGATTCAGCCTCAACTTGAGGTCACTCCTATCACCAAGTATGGTTCAGATCCTTGTCTAGTGGTCGGTCGTCAGATTGCTGTTAACAAGACTTATATATGTTATGGTTTGAAACCGGGAACTATCAGGGTTCTTAATATAAACACGGCATTAAGATCACTGCTTAAAGGTCTTGCTCAGAGGGTTACAGATATGGCTTTCTTTGCGGAAGATGTTCACCTTTTAGCTAGTGCAAGCATGGATGGACGAGTTTATGTATGGAAGATTACAGAAGAACCTGATGAAGATGATAAGCCACAAATTACAGGAAAGATAGTTACAGCCGTCCAAATTGTAGGAGAAGGAGAACCTGTTCATCCTCGAGTTTGTTGGCACTGCCATAAACAAGAGGTTCTTGTAGTTGGAATTGGAAATCGTATACTTAGATTTGATACTACAAAGATTGGGAGAGGCGAAACATACTCTGCAGATGAACCACTCAGATGCCATGTTGACAAGTTGATTGATGGAATTCAGTTTGTTGGCAAGCATGATGGTGAAGTGACTGATTTATCAATGTGCCAATGGATGACCACTCGTCTGGTTTCTGCTTCAGTAGATGGAACAATAAAGATCTGGGAAGATCGCAAATCATCTCCAATTGCAGTACTGAGGCCACATGATGGTCTTCCGGTCAACTCTGTTACATTCTTGACTGCCCCTCATCGCCCAGATCATATCATACTGATCACCGGGGGTCCCTTGAACCGTGAAATGAAAATATGGGCTTCAGAAAGTGAAGAAGGATGGTTGCTTCCTAGTGATGCAGACTCATGGCATTGTACTCAAACATTGGAATTGAAGAGTTCTGAAACAAGAACTGAAGACTCCTTCTTCAATCAAGTTGTTGCATTATCTCAATCTGGTCTTCTCTTATTGGCAAATGCCAAGAAAAATGCTATTTATGCTGTCCACCTGGATTATGGTCCAAACCCGGAATCCACCCGGATGGATTACATTGCAGAATTCACTGTCACTATGCCAATTTTGAGCTTTACTGGCACTAGTGATCTCTTACCACATGGGGAACACACCATTCAGGTTTATTGTGTCCAAACACAAGCCATTCAACAATATGCTTTGGACTTGTCTCAATGCCTACCACCTCCAATTTATGATGAAAAAATTGGTTTGGAAAGCAAATTGGATGACATGCCATTGCCGGAAGCTTCCGCCTCATCCCTAAATGAGACTGATATTTCTTGTGTTTTATCGACGCCAGTTTCTTCAAGCCCTAAGTTATCTAGAAATGTTTCTGACCTGAGAAGTCCATCTGGTGGTTTTGAGCCACGTCAGCAAGTAAATGGTTACGAGGATCTGAAGATTTTGGAAACTTCTAATTCAAATCTGGCTAATACGCCCTCGTTGGATGATGATACAAGGATTGATGAAACTAAAGTTGTTAAAGACGATCGGACTGTTAAATTTATGCATCCGACTCATCTAGTGACTCCCGCTGAATTGATGGCCACGTCATCATCTGAAATAAATCATGTTACAGAGGTAACACATGACGTGGTGGTCAACCCAGATACGCAGAATGCTGAGGTGGAGGTGAAGGTTGTGGGTGAAATGGGAACGAGTCAAAATGCTGACGAGGCGAAGGAAAAGTCAAAATTATTCTCGTCCCAGGCATCGGGACTCGGAATCGATATGGCACGGGAAACTTACGAGCTGAAACAACTTGATGAGGTGGCGGATCAAACTTCAGATGTTCTGGATGATGTTCAAGACATGGAAATTGAGTCGTCTGTTCCTGTGGGCCCCACATCAAAATCAAAAAAGAAAAAGGGAAAGAATGCTCAAAATTCAGGTCAAAGTGTGTTAAAGTCAACCGATTCGTGTGATGAATTAGGTGGGAGTTTGAGTTTGAGCATCCTTTCACAAATTCAGTCAATGCAAGAAGCAATTGGTCAAATTCTGAGCAGTCAAAAGGAAATCCAGAAGCAGATTCCGGTGGTGGTTGGGAGCCCCATTACAAAAGAAGGAAAAAGGATCGAGGCGGGAATCGGGAAAACCATGGAGAAAATTCATAAAGCCAATTCTGATGCTTACCTGGCGCGTTGTCAAGAAGAGTTTGCCAAACAGGAAAAGTCAAACCGGGAACGCTATCAGCAGGTTGCCACGTCAGCTGCAAACAGTCACAAGGAATTGCTTACATCATCCGAGAAAATCTTGAAGAAGGAAATGGCTGCAGTGGGGCCCGCTGTCGGACGATCTGTTACTCCAGTTATCGAAAAGGCAGTCACCACAGCTGTCTCAGAGGCTTTTCAGAGAGGCATAGGTGATAAGGCTGTAAATCAGTTGGAAAAAACAGTTAATACTAAGCTTGAAGCAACTGTTTCAAGGCAAATTCAAGTCCAATTTCAAACATCTGGAAAACAAGCTTTACAGGAAGCACTGAAGAGTAGTATGGAAGCTTCTGTTCTTCCTGCTTTCGAGATGTCCTGCAAAACCATGTTTGACCAAATTGACTCCACATTTCAAAAAGGAATGGTTGACCATACAACCGCAGCTCATCAGCAAGTTGAATCTATACATTCACCTTTAGCATTTGCTTTGAGGGATACTATCAATTCAGCATCATCGATAACTCAAACATTGACCAGTGAGTTGACCGATGGTCAACGGAAATTGGTGGCTCTTGCAGGGTCAAAATCGATGGAAGCACCAGTGGATCCAACAAAAGAGCTATCAAGATTAGTATACGAGCACAAATACGAGGAGGCTTTTACTTCCGCACTTCAAAGAAGTGACGTACGGATCGTTTCCTGGTTATGCTCACAGGTGGATTTACAGGGGATATTAACGAGTAATCCTGTACCTTTGAGCCAAGGGGTATTACTGTCATTACTGCAGCAGTTGGCGTGTGATATCGGGAACGATACATCGAGGAAACTTGGATGGATGATGGATGTGGTGGTGGCGATCAAACCAACGGATGGGATCATAGCGATGCATGTGAGGCCGATATTTGAACAGGTGTATTCAATCATGAACCATCAAATCAGTATTCCCACGACTACGGTTGCTGAGCTGTCAAGCATACGTGTTGTTATGAGGCTTGTCAACTCCACACTTCGGACCATGTAA 3714 44.18 MASPGNQNQQPGGAPFDVQRLFNPSSSPPPISPTLQNPNHPYPPPSSAASYPPPTVTGGPYSYHPPQTNPLFHHQFHIPPPPFHPQQQPPPENHLPSNLQHQRSLPYPTSPLQPPSPKNTNPNHGARLMALLSAPPPSTPDIPSQSSIPLPNPNLNPMLPSSTGPSRMSSSKLPKGRHLVGDRVVYDIDVRLPGEIQPQLEVTPITKYGSDPCLVVGRQIAVNKTYICYGLKPGTIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASMDGRVYVWKITEEPDEDDKPQITGKIVTAVQIVGEGEPVHPRVCWHCHKQEVLVVGIGNRILRFDTTKIGRGETYSADEPLRCHVDKLIDGIQFVGKHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRKSSPIAVLRPHDGLPVNSVTFLTAPHRPDHIILITGGPLNREMKIWASESEEGWLLPSDADSWHCTQTLELKSSETRTEDSFFNQVVALSQSGLLLLANAKKNAIYAVHLDYGPNPESTRMDYIAEFTVTMPILSFTGTSDLLPHGEHTIQVYCVQTQAIQQYALDLSQCLPPPIYDEKIGLESKLDDMPLPEASASSLNETDISCVLSTPVSSSPKLSRNVSDLRSPSGGFEPRQQVNGYEDLKILETSNSNLANTPSLDDDTRIDETKVVKDDRTVKFMHPTHLVTPAELMATSSSEINHVTEVTHDVVVNPDTQNAEVEVKVVGEMGTSQNADEAKEKSKLFSSQASGLGIDMARETYELKQLDEVADQTSDVLDDVQDMEIESSVPVGPTSKSKKKKGKNAQNSGQSVLKSTDSCDELGGSLSLSILSQIQSMQEAIGQILSSQKEIQKQIPVVVGSPITKEGKRIEAGIGKTMEKIHKANSDAYLARCQEEFAKQEKSNRERYQQVATSAANSHKELLTSSEKILKKEMAAVGPAVGRSVTPVIEKAVTTAVSEAFQRGIGDKAVNQLEKTVNTKLEATVSRQIQVQFQTSGKQALQEALKSSMEASVLPAFEMSCKTMFDQIDSTFQKGMVDHTTAAHQQVESIHSPLAFALRDTINSASSITQTLTSELTDGQRKLVALAGSKSMEAPVDPTKELSRLVYEHKYEEAFTSALQRSDVRIVSWLCSQVDLQGILTSNPVPLSQGVLLSLLQQLACDIGNDTSRKLGWMMDVVVAIKPTDGIIAMHVRPIFEQVYSIMNHQISIPTTTVAELSSIRVVMRLVNSTLRTM 1237
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g03181 1237 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 20 1236 IPR045152 GO:0000932(PANTHER)|GO:0031087(InterPro)|GO:0031087(PANTHER)
Laca7g03181 1237 SMART WD40-4 362 401 IPR001680 GO:0005515(InterPro)
Laca7g03181 1237 SMART WD40-4 242 282 IPR001680 GO:0005515(InterPro)
Laca7g03181 1237 SMART WD40-4 404 450 IPR001680 GO:0005515(InterPro)
Laca7g03181 1237 MobiDBLite consensus disorder prediction 75 92 - -
Laca7g03181 1237 FunFam enhancer of mRNA-decapping protein 4 201 514 - -
Laca7g03181 1237 MobiDBLite consensus disorder prediction 613 637 - -
Laca7g03181 1237 MobiDBLite consensus disorder prediction 1 175 - -
Laca7g03181 1237 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1107 1212 IPR049404 -
Laca7g03181 1237 SUPERFAMILY WD40 repeat-like 215 514 IPR036322 GO:0005515(InterPro)
Laca7g03181 1237 MobiDBLite consensus disorder prediction 93 107 - -
Laca7g03181 1237 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 202 513 IPR032401 -
Laca7g03181 1237 Gene3D - 210 563 IPR015943 GO:0005515(InterPro)
Laca7g03181 1237 FunFam Enhancer of mRNA-decapping protein 4 1150 1236 - -
Laca7g03181 1237 Gene3D - 1150 1236 IPR044938 -
Laca7g03181 1237 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 410 IPR001680 GO:0005515(InterPro)
Laca7g03181 1237 MobiDBLite consensus disorder prediction 613 639 - -
Laca7g03181 1237 MobiDBLite consensus disorder prediction 782 819 - -
Laca7g03181 1237 MobiDBLite consensus disorder prediction 1 25 - -
Laca7g03181 1237 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 283 IPR001680 GO:0005515(InterPro)
Laca7g03181 1237 MobiDBLite consensus disorder prediction 26 51 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g03181 K12616 enhancer of mRNA-decapping protein 4
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Event-related genes

Select Gene_1 Gene_2 Event_name
116442 Laca7g03181 Laca9g02868
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr9:8599387 Laca7g03181 Laca-Chr7:148825224 transposed
Laca Laca-Chr7:148825224 Laca9g02868 Laca-Chr9:116713993 wgd