AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g03187 ATGGGAAAGAGAAAGGAGCGTAAACTGGCGGCGAAGATTGCAGTTAATAGAAGAGTAAAACTCGATCTTATGGCGGAACCCTCTGGAGATTTTGGTGATTCGTCCAACAAAGAAGACGTTGAAGGTGGCGGCAATTCAAAAAATCATGCTGGTTCACCCAATTCACCATCTTCTTCAGCCATGTTTGCTCTCCCAAGATATTCCTTTCAGAATGTTAGGTGGCTGTGGTATTGGGAACTCAATTGGTCATCTGAGCCTGTTCAACTTTGCCACAGTGTTTCTTTGATTGAAATTCCTCACATGTTACTACGACATTTCAACAAGACTTGTGGTCAAAAGCCAGAAAATCCTCTTTTGTTGCTTGGACAATATAGCGATGAGGAATTGGAGGAAGAATCTGGTAAAGAAATCAGCCATGATACTAGAGAGAATTCACCAGCTGAGCTTGATGAACAGGTAAAGGCAGACAGTCATGAGGGTACAGAAGTAGATAAAGATGAAAATCTTACTTGTGAAAAACCTGATCAAGAGAACAAAGACCAGTCTTCTTCATTGGATGTGGAAGAAAATGGTGTTGTTGAAGATGATATGGTTTTGGCCTCACACAAAGACATGGATGAAGTGGAGCAGACAACTGTGTCGTGGACATCCGACACACAAACAGAAAATACGGATTCAGGATGGAAAATGGTGTTGCATGAGGAGAGTAATTCATATTATTACTGGAACATTGCGACTGGTCAAACGTCTTGGGAAGTCCCTGTTGACCTGGTTCAAGGAAATGAACCAGCCTATGATCCTCAATCTGTTACAGAAGTTGAGGAAATGCATGTAACTTCTGATGATACACAACCGAATGATGGGCCCACAAAATCTTTGGTTTCTGAGGCCACTGACAATGAGAGTTGTAGGCCAGAATTACAAGTGCAGAATGAAAACCATACAGATATCATGACCATGTCAAATGATGTGGCCGAGGGTAATTATGTCAATGCAATAGATGGTGTGAATAATGGGGAAGCCCACCATACTGATTCTTTACATCTTTTGCAACTTGGTGAAAGTTTATCGGAGAGATTAAGATCTTTGAAAGGGGAAAACAAAGAGATATCAAAGTTGATGATTGAACTTGATGTAAGGCTTGCAGACATTAAGTCATTAGTACCTTATGGATCATCATTGCTTCCTTTTTGGCTTCATTCTGAAAATCATTTGAGAAAACTAGAATCCGCAATCAACAATGAGATTCAAGAACATTCTCAATCACCAAACGAGGCAGAAAAGAAGGTAGAAGAGAACATGAATGAAGCAACTGCAAGTGAAAAAGAAGAAGAAGAAAATGAAAATGAAAATGAAATATCAAATGCAGTTCCTCAAGCAGATACAGATGACGACATGGATGTTGAAATGGAGGTTGAAGATGAACCAGTTGTCCAAAACAGGCCCCGATCTGAAGAAGAATCTGAGGTTCCACCACCACCGAATGATGAATGGGTCCCGCCTCCACCACCGGATGATGAACCGTTACCTCCACCACCGCCAGATGAACAACCTGAAGCCACATTCCCTCCACCGCAAGCTTACTCATACGGAGGAGGAGAAGGAGAAGAATATGCACATTTTGCATATGGGGGTCCGGGTCCCACTCCCACTCCCACTCCCACTCCCACTCCCAGTTTTGAATACTATGGTCAACAAGTTGTTGCAAATCATGATTACTATGTAGATGCGAATGGAGCAGCCGTCACAACCCTTTATTATGCACCAGTGGGATATCCAGGTGGAGAACATGTGACATATTACACCATACAAGAAGGGTCTGTACCAATTCAGCCAGTGATTGGCAGTGAAAGTGTTGCTTCTGATGCAGCAACTGCTCCAACAGAATCATCATCACTTCCTAAGGTTCAGCCTAAAGTTGTGCGAAATAAAAAACGAACGGTTGCTGCAGTCCCTGGTTTAAGATCCAATAAGAAGGTTTCAGGCTTGGTGGATAAGTGGAAAGCTGTTAAAGAGGAATTACACGAGGAAGACGAGGAAGAGGAAGAACCTGAAAATGCTTTAGAAGCTTTAGAGAAGAAAAAGCAACGGGAGATTGAGCAATGGCGTGCACAGCAGATTGCAACTGGAGAAGCCAAAGACAATGCTAACTTTCAGCCTCTTGGTGGTGACTGGCGAGAGAGAGTTAGAAGGAAGAGAGCTAAAAAGTCGATGGAAGCTGAAGATAAGGAAGCCAAGGCCACGGGCACTGTTGATACAAACCAAAAACCTGATCTTGTCCAACTTACAAAACAACTTCCATCCCCTTGGCAGGCATATTGGGATGAAGCATCGAAGCAAGTTTATTATGGGAACTCAAAAACATCAGAGACCTCATGGACCAAACCTCAACCCTAA 2397 42.76 MGKRKERKLAAKIAVNRRVKLDLMAEPSGDFGDSSNKEDVEGGGNSKNHAGSPNSPSSSAMFALPRYSFQNVRWLWYWELNWSSEPVQLCHSVSLIEIPHMLLRHFNKTCGQKPENPLLLLGQYSDEELEEESGKEISHDTRENSPAELDEQVKADSHEGTEVDKDENLTCEKPDQENKDQSSSLDVEENGVVEDDMVLASHKDMDEVEQTTVSWTSDTQTENTDSGWKMVLHEESNSYYYWNIATGQTSWEVPVDLVQGNEPAYDPQSVTEVEEMHVTSDDTQPNDGPTKSLVSEATDNESCRPELQVQNENHTDIMTMSNDVAEGNYVNAIDGVNNGEAHHTDSLHLLQLGESLSERLRSLKGENKEISKLMIELDVRLADIKSLVPYGSSLLPFWLHSENHLRKLESAINNEIQEHSQSPNEAEKKVEENMNEATASEKEEEENENENEISNAVPQADTDDDMDVEMEVEDEPVVQNRPRSEEESEVPPPPNDEWVPPPPPDDEPLPPPPPDEQPEATFPPPQAYSYGGGEGEEYAHFAYGGPGPTPTPTPTPTPSFEYYGQQVVANHDYYVDANGAAVTTLYYAPVGYPGGEHVTYYTIQEGSVPIQPVIGSESVASDAATAPTESSSLPKVQPKVVRNKKRTVAAVPGLRSNKKVSGLVDKWKAVKEELHEEDEEEEEPENALEALEKKKQREIEQWRAQQIATGEAKDNANFQPLGGDWRERVRRKRAKKSMEAEDKEAKATGTVDTNQKPDLVQLTKQLPSPWQAYWDEASKQVYYGNSKTSETSWTKPQP 798
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g03187 798 Pfam WW domain 766 796 IPR001202 GO:0005515(InterPro)
Laca7g03187 798 Pfam WW domain 226 254 IPR001202 GO:0005515(InterPro)
Laca7g03187 798 MobiDBLite consensus disorder prediction 493 521 - -
Laca7g03187 798 MobiDBLite consensus disorder prediction 127 192 - -
Laca7g03187 798 SUPERFAMILY WW domain 761 796 IPR036020 GO:0005515(InterPro)
Laca7g03187 798 Coils Coil 726 746 - -
Laca7g03187 798 ProSitePatterns WW-rsp5-WWP domain signature. 770 796 IPR001202 GO:0005515(InterPro)
Laca7g03187 798 MobiDBLite consensus disorder prediction 724 749 - -
Laca7g03187 798 CDD WW 767 798 IPR001202 GO:0005515(InterPro)
Laca7g03187 798 MobiDBLite consensus disorder prediction 25 58 - -
Laca7g03187 798 CDD WW 226 256 IPR001202 GO:0005515(InterPro)
Laca7g03187 798 PANTHER OS06G0298400 PROTEIN 314 461 - -
Laca7g03187 798 Coils Coil 427 455 - -
Laca7g03187 798 Coils Coil 674 705 - -
Laca7g03187 798 ProSitePatterns WW-rsp5-WWP domain signature. 228 254 IPR001202 GO:0005515(InterPro)
Laca7g03187 798 ProSiteProfiles WW-rsp5-WWP domain profile. 764 798 IPR001202 GO:0005515(InterPro)
Laca7g03187 798 MobiDBLite consensus disorder prediction 421 437 - -
Laca7g03187 798 MobiDBLite consensus disorder prediction 474 490 - -
Laca7g03187 798 Gene3D - 216 267 - -
Laca7g03187 798 MobiDBLite consensus disorder prediction 132 184 - -
Laca7g03187 798 ProSiteProfiles WW-rsp5-WWP domain profile. 222 256 IPR001202 GO:0005515(InterPro)
Laca7g03187 798 SUPERFAMILY WW domain 220 256 IPR036020 GO:0005515(InterPro)
Laca7g03187 798 MobiDBLite consensus disorder prediction 416 554 - -
Laca7g03187 798 MobiDBLite consensus disorder prediction 708 761 - -
Laca7g03187 798 Gene3D - 761 798 - -
Laca7g03187 798 SMART ww-5 223 256 IPR001202 GO:0005515(InterPro)
Laca7g03187 798 SMART ww-5 765 798 IPR001202 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g03187 K24774 formin-binding protein 4